Leishmania braziliensis: LBRM_35_3050
Help
Entry
LBRM_35_3050 CDS
T01113
Name
(RefSeq) putative pre-mRNA splicing factor ATP-dependent RNA helicase
KO
K12818
ATP-dependent RNA helicase DHX8/PRP22 [EC:
5.6.2.6
]
Organism
lbz
Leishmania braziliensis
Pathway
lbz03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
lbz00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
LBRM_35_3050
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
lbz03041
]
LBRM_35_3050
Enzymes [BR:
lbz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
LBRM_35_3050
Spliceosome [BR:
lbz03041
]
Complex C
Other components
Step II factors
LBRM_35_3050
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
HA2_C
DEAD
AAA_22
WHD_HA2
AAA_30
AAA_19
Flavi_DEAD
nSTAND3
AAA_25
YWFCY
AAA_7
AAA_23
Motif
Other DBs
NCBI-GeneID:
5419900
NCBI-ProteinID:
XP_001568924
UniProt:
A4HPE9
A0A3P3ZJ10
LinkDB
All DBs
Position
36:complement(1166281..1169523)
Genome browser
AA seq
1080 aa
AA seq
DB search
MNTGGDDDAVAEQQNMSFLMQLQELYCKTALYEQLEQIMGHPATQEESDGYLDDVEGLVE
LYCSEREAAKKTAPPAEGADAAAQCEEATKQHILKSLSDAINGVAEADEEPDIPMSSIQQ
LYHVLHDCLTIDTVETGLAVGSLLLADDAKRSAEEASRLAYQQQQRHMHSGVDTASMTTS
TAERKNAMKVSPEEMFRLAQHVRSGLADEAELLKLRSEDNEEEGNGEQDVELNDEEPRFL
RNMGFSSMLHRRINYRAPLPSQQLRDARTPQHRQAILDRLAQRQQGDTSKLNSMEKAAQM
QEKINMDRRVIARKAQRTQQESREYDFGAALSVRDDRSVLDESRYEWKGRMLESEEYSTQ
PTLLHSEQNTLPEEGGFRPQDLPTKLAPWMKHSFGRKPRFGLPETLQTIQEQRISLPIYA
KKEALLNFVDAHQVTILVGETGSGKTTQIPQYLVEHGYADRGMIACTQPRRVAAETLAMR
VAEEYGCRLGEEVGYTVRFRDVTSSLTKIKYMTDGMLLREALLDDSFQRYSVIILDEAHE
RSISTDLLFAIVRQALRKHEGLKAMVTSATLETEKFCAYFGASEPFRIEGRTFPVETYYL
TDPTTDYVRTALQTVMMIHLQEPPGDVLVFFTGQEEIELGGEQLFRWMEMLRRQVSTPLP
DLMVLPLTATMPQEVQSKVFESTPPGCRKVVLATNVAETSITITNLYYVVDSGFCKQNIF
DAKHGIDQLKVMPVSQAQAKQRSGRAGRIGPGKCYRMYTEKQFTTDMVPETVPDIMRTSL
FHVTLQLKAMGLDLLNLELMDCPPKGAIVSALEKLRYLEALDDDGLLTPLGSRMAQLSID
PSQSKTLLTAVDLGCSEPVLTIVSMLAVQKRGVFYRPRDQQEASDAARRQFMQPEGDQLT
LMAVYDAWVENGMSEDWSKHNFLKHRMLVEARDTRDQLKEMLARRNQHISHENDTNIDEV
RKSITAGYFFNAARRVDSHTRSYVTLSDRREVYVHPSSVLIDDPPKYVLYDDLRMTKREY
MTELLAIEPKWLVELAPAFYAKPKEGRLTKEQAAERFTPILKSWETGSSWRISRLKKQRR
NT seq
3243 nt
NT seq
+upstream
nt +downstream
nt
atgaacactggcggcgatgatgacgccgttgccgagcagcagaacatgtcgttcctcatg
cagctgcaggagctgtactgcaaaacagctctttatgagcagctggaacagattatgggc
catcccgccacccaagaagagagcgacggctaccttgacgacgtggaagggctcgtcgag
ctctactgctctgagagggaagcggcgaagaagacggcgccacccgctgagggggctgac
gccgctgctcagtgtgaggaggcgacgaagcagcacatcctgaaatctctctccgatgct
atcaacggcgtggccgaggcggatgaggaacccgacatacccatgtcaagcatccagcag
ctgtaccacgtcctccatgattgcctcaccatagatacggtggagacaggactcgctgtc
gggtcattgctgctggccgatgatgccaagcgcagcgctgaggaagcgtcccgccttgcc
taccagcagcagcagcgtcacatgcacagcggtgttgacacggccagcatgaccacctcc
actgcggagcgcaagaatgccatgaaggtctctccggaagaaatgttccgtctcgctcag
cacgtccgcagtggtcttgccgacgaggcggagctgctcaagttgcgttccgaggacaac
gaggaagagggcaacggcgagcaggacgtggagttgaacgacgaagagccccgcttcttg
cgcaacatgggcttctcctcgatgttgcaccgtcgcatcaactaccgtgcaccactgccg
tcgcagcagctgcgtgatgcccgcacaccgcaacaccggcaagccatcttggacagactc
gcccaacgtcagcagggtgatacgtcaaagctgaacagcatggagaaggcggcgcagatg
caggaaaagataaacatggatcgccgcgtcattgcccgcaaggcgcagcgtacccagcag
gagtcccgtgagtacgacttcggggcagccttgagcgttcgagatgatagatcagtgctc
gacgagagccgctacgagtggaaaggcaggatgctagaaagtgaggagtactcgacacag
cccacccttctgcactcggagcagaacacactgccagaggaaggcggcttccgaccacag
gatctgccgacgaagctggcgccatggatgaagcacagctttggacgcaagccacgcttt
ggcctgcctgagacgctgcagacgatacaggagcagcgcatctccctcccgatttacgcg
aagaaggaggctctgctcaactttgtagatgcacatcaggtcaccatacttgtcggagag
acaggcagcggcaagacgacgcagattccacagtacctggtggaacacgggtacgccgat
cgaggcatgatcgcctgcacgcagccccgccgtgtcgccgccgagacgcttgccatgcgc
gtcgctgaggagtacggatgccgtcttggcgaggaggtcggttacaccgttcgcttccgc
gatgtcacttcgtcgctcacaaagatcaagtacatgacagacggcatgctgctgcgtgaa
gcgctgctggacgacagcttccagcgctacagcgtcatcatcctcgacgaggcacatgag
cgctccatcagcaccgatctgctcttcgccattgtgcggcaggcgctgcggaaacacgag
gggctgaaggctatggtgacctccgccaccctcgagacggagaagttctgcgcctatttt
ggcgcctcggagccttttcggattgagggccgcacatttccagtagagacgtactacctc
accgaccccaccaccgactacgtgcgaaccgccctgcagacagtcatgatgattcacctg
caagagcctccaggggacgttctggtcttcttcacggggcaggaagagatcgagctgggt
ggggaacagctgtttcgctggatggagatgctgcggcggcaggtgagcacgcctttgccc
gacttgatggtgctgcctctcacggccaccatgccacaggaggttcagtcgaaggtgttc
gagtccaccccaccggggtgccgtaaggtcgtgctggccacgaacgtcgctgagacgtcg
atcactatcaccaacctttactatgtcgttgacagcggcttctgcaagcagaacatcttc
gacgccaagcacggtatcgatcagctcaaggtgatgccggtgtcgcaagcgcaggcgaag
cagcgctccggtcgtgcggggcgtatcgggcctggcaagtgctaccggatgtacacagag
aagcagttcacgaccgacatggtgccggagacagtgccagacattatgcggacaagcctc
ttccacgttaccctgcagctgaaggccatggggctcgatctcctcaatctcgagctcatg
gactgccctccgaagggggccattgtgtcagcactagagaagctgcgctaccttgaggcg
ctcgacgacgacggactgctgactccgctagggagtcgcatggcgcagttgtcaatcgac
ccctcgcagagcaaaacattactcaccgcggttgacttgggctgcagtgagccggtcctc
acgattgtctcgatgctagcagtgcagaaacgtggcgtcttctaccgccctcgagatcaa
caagaggcgtctgacgcggcgcggcgccagttcatgcagccggagggtgatcaactcacc
ctcatggcggtctatgacgcttgggtggaaaacggcatgtcggaagactggagcaagcac
aacttcctgaagcaccgcatgctggtcgaggcgcgtgacacacgcgaccagctcaaggag
atgctggcacggcgcaaccagcacatatcgcacgagaatgacacaaacatcgacgaggtg
cgcaagtccatcacggccgggtacttcttcaacgcggcgcggcgcgtcgactcacacacc
cgctcgtacgtcacattgtctgacaggcgtgaggtgtacgtgcacccctcctcggtgctc
atcgacgatccgcccaagtacgtcctgtacgatgacctccgcatgacgaagcgggagtac
atgacggagcttctggcgatcgagccgaagtggctggtggagctggcgccagccttttac
gcaaagccgaaggaagggcgactcaccaaggagcaagctgctgaacgcttcacaccaatt
ctaaagtcgtgggagacaggcagttcctggcgtatctcgcgtctaaagaagcagcgacgt
tga
DBGET
integrated database retrieval system
