Leishmania braziliensis: LBRM_35_3220
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Entry
LBRM_35_3220 CDS
T01113
Name
(RefSeq) putative ATP-dependent RNA helicase
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
lbz
Leishmania braziliensis
Pathway
lbz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lbz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LBRM_35_3220
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lbz03019
]
LBRM_35_3220
03041 Spliceosome [BR:
lbz03041
]
LBRM_35_3220
03009 Ribosome biogenesis [BR:
lbz03009
]
LBRM_35_3220
03016 Transfer RNA biogenesis [BR:
lbz03016
]
LBRM_35_3220
Enzymes [BR:
lbz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
LBRM_35_3220
Messenger RNA biogenesis [BR:
lbz03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
LBRM_35_3220
Spliceosome [BR:
lbz03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
LBRM_35_3220
Complex C
U4/U6.U5 tri-SnRNP related factors
LBRM_35_3220
Ribosome biogenesis [BR:
lbz03009
]
Eukaryotic type
Pre-60S particles
Helicases
LBRM_35_3220
Transfer RNA biogenesis [BR:
lbz03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
LBRM_35_3220
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DSHCT
DEAD
MTR4_beta-barrel
MTR4-like_stalk
DEXQc_Suv3
ResIII
Helicase_C
ATPase_2
FlxA
nSTAND3
AAA_16
PhoH
AAA_22
nSTAND_NTPase5
Phage_scaffold
Motif
Other DBs
NCBI-GeneID:
5419917
NCBI-ProteinID:
XP_001568941
UniProt:
A4HPG6
A0A3P3ZIP7
LinkDB
All DBs
Position
36:complement(1228118..1230982)
Genome browser
AA seq
954 aa
AA seq
DB search
MSDRCEDKPAAKRARHEVDPAITFPYELDTFQKASIDALEDGDSVLVSAHTSAGKTTVAL
YAIAKALREKKRVIYTSPIKALSNQKFREFSEKFDSVGLMTGDTTIKADSDCLVMTTEIL
RSMLYRGTEMLREVGCVVFDEVHYMRDKSRGVVWEETISLLPEGCQYVFLSATIPNAREF
ADWVESIHPTTKVHVIHTNYRPVPLQHYLYPAGADGIFLIVDEKGKFREDNFGKAMTSMG
AEGSANGAGAAVPGNSASSGPRGNKGGGGGHRRGGSSQSMMEIVKLVMDRNMYPVIVFSF
AKAECERNALALSRLNFNNTEEDALVMEVFGNAMESLAEEDRKLPAIEHLLPLLKRGVGI
HHSGLLPILKEVVEILFQAGLVKVLFSTETFSMGLNMPARTVVFTSVKKFDGEKNRYLTG
GEYIQMSGRAGRRGLDRVGVVIAMVDEAVEPDTLKQLTGGGADVLLSSFHLTYNMVLNLL
RVEDVDPEFMMKRSFSQFQRLRDKPALEEKCAALRRSIEEIHVANESAFRQYTICEDMIS
KKKGEVNQILHQPKFLKNWVQAGRFVHIIRASDQLDFGWGICRSFTAKNTNPDFSDASTF
SIHAAVICLKADVLNPTALTPCPVSEYTSEKADLYTVMFDFSDVQSLATLKTNLPESPDS
ERGRAEMVQILSKLQRQFGSNVPVLTAAQMGPEDAQLSKLQKQVSNLQKQLEGNVLTTSP
TPELQEEFEQYKRKADLETQLEQVKDELASMGKAVFSEELKQMMRVLRRLDYIDKDNIIL
RKARVACEITTTDENEILLTELLFKGVLNSMETEMVVALLSCLVNVHRTPDGFSLPQEFE
QPLKDLNEVVTRIATVSAESGLMQENSSVEKVMPSLMEVTYLWAKGAKFVDLVSKTTAYE
GEIVRMMRRLEEMLRQLASAARSPAIGSIVLHDKFLKGVQLIKRDIVFASSLYL
NT seq
2865 nt
NT seq
+upstream
nt +downstream
nt
atgtcagatcgatgcgaagacaagccggcggcgaagcgggcacgccacgaggtcgacccc
gccatcacattcccctatgagctcgacacctttcaaaaggcaagtatcgacgctctcgag
gacggcgacagtgtcctcgtgtcggcgcacacgtcagccggtaagaccacggtggcactc
tacgccatcgccaaggcgctgcgagagaagaagcgtgtcatctacacctcccccatcaag
gcccttagtaatcaaaagttccgcgagttctccgagaagttcgactccgttggtcttatg
accggcgacaccaccatcaaggcggactcggactgtcttgtcatgacgacggaaattctg
cgcagcatgctgtaccgcgggaccgaaatgctgcgcgaagtgggctgcgtcgtcttcgat
gaggtacactacatgcgcgacaagtcccgcggcgtggtgtgggaggagacgatcagctta
ctgcctgagggatgccagtacgtcttcctctctgccaccatcccaaacgcgcgcgagttt
gcggactgggtggagagcattcacccaaccacgaaggtgcacgtcattcacacgaactac
cgaccagtgccactgcagcattacttgtacccggccggggccgacggcatcttcctcatt
gtggatgaaaagggcaaattccgcgaggacaacttcggcaaggcaatgacatcgatgggg
gcggagggcagtgcaaacggtgcgggggcagcagttccaggcaacagcgcctctagcggc
ccgcgcgggaacaagggcggcggcggtggccaccgccgcggcggctcttctcagtccatg
atggagattgtgaagcttgtgatggaccgcaacatgtacccagtgatcgtcttctccttc
gccaaggcggagtgcgagcgcaacgccctcgcgctttcgcggctgaacttcaataacacc
gaagaggatgcacttgtgatggaagtatttggcaatgctatggagtcgcttgcggaggag
gaccggaagcttcccgctattgagcaccttctcccgctcctgaagcgcggcgtcggcatc
caccactccggtctccttcccattctgaaggaggttgttgagattcttttccaggcgggt
ctggtcaaagttctcttctccaccgagaccttctcgatgggacttaacatgccggcccgt
accgtcgtcttcacctctgtcaagaagtttgacggcgagaagaaccgctacctcactggt
ggcgagtacattcagatgtcggggcgcgccggccggcgtggcctcgaccgcgtcggcgtt
gtcattgccatggtggatgaggcagtggagccggacacgctgaagcagctgaccggcggt
ggtgccgacgttctgctcagcagttttcacctgacctacaatatggtgctgaatctgcta
cgcgtcgaggacgtcgatcccgagttcatgatgaagcgcagcttctcgcagttccagcgt
ctgcgtgacaaaccagcgctggaggagaagtgtgctgctctgcgcaggtccatcgaggaa
atccacgtcgccaacgagagcgcttttcggcagtacacaatttgcgaggacatgatctcg
aagaagaagggtgaggtgaaccagattctgcaccaacccaagttcctcaagaactgggtg
caggcggggcgctttgtgcatatcatccgcgcctccgatcagctcgactttggctggggc
atctgccgctcgtttaccgcaaagaacaccaacccagacttcagcgacgccagcaccttc
tccattcatgctgccgtgatctgcttgaaggcagatgtgttgaatccgactgccctgacg
ccgtgcccggtcagcgagtacacctcagaaaaagcggacttgtacacagtgatgtttgac
ttctcagacgtccagagccttgcgacgctcaagacaaaccttcccgaaagcccagactcg
gagcgagggcgtgccgagatggtgcagatcctgtcgaaactgcagcgtcagttcggcagc
aatgttccagtgctcactgctgcgcagatgggcccagaggatgcgcaactgagtaagctg
cagaaacaagtgtcgaacttgcaaaaacagctcgagggtaacgtccttaccacctcccct
acaccagagctgcaagaggaatttgagcagtacaagagaaaggcagacctcgagacccaa
ctggagcaggtgaaggatgaattagcgagcatgggcaaggctgtcttctccgaagagctg
aagcagatgatgcgggtgctgcgtcgcctggactacatcgacaaggacaacatcatcctc
cgcaaggcccgcgtcgcgtgcgagataacgacgacagacgaaaacgaaatcctgctgacg
gagctgctctttaagggtgtgctgaactccatggagacggagatggttgtggctctcttg
tcatgcctcgtcaacgtgcaccgcaccccggacggcttctcgctgccgcaggagttcgag
cagccgctgaaggacctcaacgaggttgttactcgcatcgccaccgttagcgccgaaagc
gggctgatgcaggagaacagctcggtggagaaagtcatgccctcactcatggaggtgacc
tacctctgggcaaagggggcgaagttcgtcgaccttgtgagcaagaccaccgcgtacgaa
ggtgagattgtgcgcatgatgcgtcgtttggaggagatgctgcgccagctggcctccgcg
gcgcggtcgccggccatcggcagcattgtgttgcacgacaagttcctcaagggtgtccag
cttattaagcgtgacatcgtctttgcgtcatcgctgtacctgtag
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