Lacticaseibacillus paracasei ATCC 334: LSEI_0288
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Entry
LSEI_0288 CDS
T00407
Name
(GenBank) Rad3-related DNA helicase
KO
K10844
DNA excision repair protein ERCC-2 [EC:
5.6.2.3
]
Organism
lca
Lacticaseibacillus paracasei ATCC 334
Pathway
lca03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
lca00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
LSEI_0288
09124 Replication and repair
03420 Nucleotide excision repair
LSEI_0288
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lca03021
]
LSEI_0288
03036 Chromosome and associated proteins [BR:
lca03036
]
LSEI_0288
03400 DNA repair and recombination proteins [BR:
lca03400
]
LSEI_0288
Enzymes [BR:
lca01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
LSEI_0288
Transcription machinery [BR:
lca03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
LSEI_0288
Chromosome and associated proteins [BR:
lca03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
LSEI_0288
DNA repair and recombination proteins [BR:
lca03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
LSEI_0288
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C_2
ResIII
PDDEXK_1
DEAD
DEAD_2
Helicase_C
PhoH
Motif
Other DBs
NCBI-ProteinID:
ABJ69148
UniProt:
Q03CC4
LinkDB
All DBs
Position
complement(287915..290299)
Genome browser
AA seq
794 aa
AA seq
DB search
MANNRIGIREFVELTVRTGDLNPITSNSNNTAIIGSQIHRKLQAAHRESDYEREVYLKTA
VTVNDEDYQLEGRADGVWTDDTGLTVEEIKTSARPWEEATQNTKDRYWAQARIYGHLLCE
QRHLDQATITLVYVQTSTDTVSRFSEVKSAAELADDFTDLLEEFRDWLKLRSDIIKRRNT
SIDQLDFPFPQFRAGQHELAAAVYKAIYSQARLFVQAPTGTGKTISALFPTLKAMGTGLI
QRAFYLTAKQSTRRVAEQAMALMAQAGLTAKSITLTAKDTITFADEPDDPSKNPYMLGYY
DRLKPALHDLLEHEDQLTRPVIETYARKHRLDPFEFSLDASLFCDVIICDYNYLFDPLVF
LQRFFSEKDDSNFFLIDEAHNLVSRARDMYTAAITDQDFVQLKKALTPYKGAPLTKVRRA
MTRILNTLDATTSTLLTSQPTIFQDDPLDDLTAVLFRFTEVVHDWLSEPPTPALQPAVDL
VLPVFFLANQYLRIGDFYDATFKTEVTKENGQIMVKELCLDPSQFVDEALKKGRGAVLFS
ATLSPMAYFQKLLGGIDNSLAYTLPSPFDPAKQAVIVDASVNTTYRRRTQDLPQLIASLT
TLVRTKSGNYLFFFPSYAYLKTAYEAFTAANPDLKVCAQENAMTEADRQTFLDHFQTGSE
PIIGFAVLGGIFAEGIDLKGNRLIGVAIISVGLPGINAETDQLRAYFDRANGQGFAYAYQ
LPGFNNVLQAGGRVIRGTKDVGVILLIDERFITPRYARLFPDHWTHAQVSYNPTQLAQLL
THFWEAHHENTAHA
NT seq
2385 nt
NT seq
+upstream
nt +downstream
nt
atggcaaacaatcgcattggtattcgtgagttcgttgagttaaccgttcgcaccggcgac
ctcaatccaatcaccagcaattcaaataacaccgccatcattggtagccaaattcatcgt
aaacttcaagctgctcaccgtgagtccgattacgaaagggaagtttacctcaaaaccgcc
gtcaccgtgaacgatgaagactatcagctcgaaggccgagcggatggtgtctggacagat
gacaccggcctcacagttgaggaaatcaaaaccagtgcgcgcccatgggaagaggccaca
caaaatacaaaagaccgctattgggcgcaagcacgtatttatggccatctactttgtgaa
caacggcatttggatcaagcaacaatcacgctggtttatgtccagaccagcaccgacaca
gtcagccgtttcagtgaagtcaaaagtgccgccgagttggctgatgatttcactgattta
cttgaagaatttcgcgactggctcaaactacgtagtgatatcatcaaacgacgcaacaca
tccatcgaccagcttgattttccatttccgcaattccgagctggtcaacatgagctagcc
gccgctgtgtataaggcgatctatagccaagcacgtttgtttgtgcaagctcccaccggc
actggtaaaaccatctctgcacttttcccaaccttaaaagcgatgggcacgggcttgatc
caacgagccttttacctaactgccaagcaaagcactcgacgcgtggctgaacaggcgatg
gccttgatggcgcaagcaggtttaaccgccaaaagtatcactttaacggctaaagacacc
atcacatttgctgacgaacctgatgaccccagcaagaatccttacatgttaggttactat
gatcgcctaaaaccagccttacacgatctactggaacacgaggatcaactgacgcgtccc
gtcatcgagacttatgctcgcaaacataggctcgatccatttgaattttcactggatgcc
agcctattttgcgacgtcatcatctgtgattacaattatctctttgatccgctggttttt
ttgcaacgcttttttagcgaaaaagatgacagcaatttcttcctgatcgatgaagcgcac
aacttagtcagtcgcgcgcgggacatgtacaccgctgccatcacagatcaagatttcgtc
cagttaaaaaaagcgctaaccccttataaaggtgccccgttgacaaaagttcgccgcgcc
atgacacgtattttgaatacccttgatgcaacgacttcaaccttgttgacctcacaaccg
accatctttcaagatgatccgcttgatgacctcaccgcagttctttttcgcttcaccgaa
gtcgttcacgattggctcagcgaaccgccaacccccgcgttgcaacctgctgtcgatctc
gttttgccggtattttttctagccaatcaatatctgcgaattggcgacttctatgacgcg
acattcaaaaccgaagtcactaaagaaaacggccagattatggttaaagaactgtgtctc
gatccatcgcaatttgtggacgaagccttgaaaaaagggcgtggtgccgtcttattttcg
gcgaccttatcaccgatggcatattttcaaaagttgcttggcgggatcgacaacagtctc
gcctatacgctgccctccccatttgatcccgccaaacaagcagttattgttgacgctagt
gtcaatacgacttatcgacgacgcacgcaggatttgccgcagttgattgcgagcctgaca
acattagttcgcaccaaaagcggcaattatctcttcttttttccatcctatgcctacttg
aaaacggcctatgaagccttcactgcggcgaatcccgatctaaaggtttgcgctcaagaa
aatgccatgactgaagcggatcggcaaacatttctagatcattttcaaactggcagtgaa
ccgattatcgggtttgccgtgcttggcgggatctttgctgaaggcattgatctcaaggga
aatcgactgattggcgttgcaattatctccgtggggttgccaggtatcaatgctgaaacc
gatcaactgcgggcctattttgatcgggcgaacggtcaaggattcgcatatgcctatcag
ctgccgggtttcaataacgtgttacaagcaggtggccgcgtcatccgcggtaccaaggac
gtcggggtcattctgctgattgacgaacggtttattaccccacgttatgcccgccttttt
ccagatcactggacccacgcccaagtcagctacaacccaacgcaattagctcaactcttg
acgcatttctgggaggcccatcatgaaaacacagctcacgcttga
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