Lacticaseibacillus paracasei ATCC 334: LSEI_0782
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Entry
LSEI_0782 CDS
T00407
Name
(GenBank) Superfamily II DNA and RNA helicase
KO
K18692
ATP-dependent RNA helicase CshB [EC:
5.6.2.7
]
Organism
lca
Lacticaseibacillus paracasei ATCC 334
Brite
KEGG Orthology (KO) [BR:
lca00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lca03019
]
LSEI_0782
03009 Ribosome biogenesis [BR:
lca03009
]
LSEI_0782
Enzymes [BR:
lca01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
LSEI_0782
Messenger RNA biogenesis [BR:
lca03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
LSEI_0782
Ribosome biogenesis [BR:
lca03009
]
Prokaryotic type
rRNA helicases
LSEI_0782
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Helicase_RecD
CMS1
Motif
Other DBs
NCBI-ProteinID:
ABJ69618
UniProt:
Q03B04
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All DBs
Position
778274..779620
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AA seq
448 aa
AA seq
DB search
MENQFKQFQLKPFVIDGLNAMAITAPTPIQQKVIPALLRGENIVGQSQTGSGKTHAFLVP
LLSMVDPTEDATQVVITAPSRELANQIYAVAQQLIQTEPVIRINRLVGGMDKQKQIDKLQ
NHQPHVAIGTPGRILDMIKSYDLVPSSVRHFVVDEADMTLDMGFLETVDAIASSFPDHLQ
MAVFSATIPQKLEPFLRKYMDNPTTIELKPQSVIADTVENILIAAKGRDKNELIYQLVTM
GHPFLVLIFANTKTSVDAIHDFLKHQGLKVAKIHGGIQPRERRRVMKDVADLKYQYVVAT
DLAARGIDIKGVSMVINAEIPRDNEFFIHRVGRTGRNGMAGTAVTLYEPGQEDQIAELEH
MGIKFAPKMIKNGELVDTYDRNRRVHRKPKQEDTSLAIRGLVKKAKQKHMPNYRKKIRTA
VLLERKRNTKIARRQALLAEKRKNRKRG
NT seq
1347 nt
NT seq
+upstream
nt +downstream
nt
atggagaatcaattcaaacaatttcaactaaaaccttttgttatcgatggtctcaatgca
atggccatcaccgccccgacacccattcaacaaaaagttattccagcgcttttgcgtggt
gaaaacattgttgggcaaagccagaccggtagcgggaaaactcacgcctttttggtaccc
ttactcagtatggtagatcctaccgaagatgcgactcaggtcgtgatcactgccccttca
cgtgagttagccaatcaaatttatgcggttgcccagcaactcatacaaactgagccggtg
attcggattaaccgtttagtcgggggaatggacaagcaaaagcagatcgacaagttgcaa
aatcatcaaccacatgtggctatcggaacgccaggtcgaatcttagacatgatcaaaagc
tatgatttagtgccatcgtctgtccgtcattttgtagtcgacgaagctgacatgacgctg
gatatgggcttcctcgaaacggttgatgcgattgcctcgagttttccagatcatctgcaa
atggctgttttttcggcgactattccgcaaaaactggaaccattcttgcgcaagtacatg
gataatccaacgacgattgaattgaaaccgcagtcggtgattgctgacacggttgaaaat
attttgattgcggcaaaagggcgcgataaaaatgagttaatctatcagcttgtcacgatg
gggcatccctttttagtgctgatttttgctaacaccaagaccagcgtggatgctatccat
gacttcttgaagcatcaaggtttgaaggtggccaagattcatggtggcattcagccgcga
gaacgtcggcgcgtgatgaaggatgttgccgacctcaaatatcagtatgtggtcgccact
gatcttgctgctcggggtatcgatatcaagggggtctcaatggtcatcaatgccgagatt
ccccgcgacaacgagttctttattcaccgagtgggccgaaccggtcggaatggcatggct
ggtacagcggtgacactgtacgaaccgggacaggaagatcaaattgccgaattagagcat
atgggcattaagtttgcgccgaaaatgatcaaaaacggtgagcttgtcgacacttatgac
cgcaatcgtcgagttcaccgcaaaccgaagcaagaagacaccagtcttgcgattcgcggt
ctggtgaaaaaggcaaagcaaaagcacatgccgaattatcgtaaaaagattcgaactgcg
gtgttattagaacgcaaacgaaataccaaaattgctcggcgccaagcgctgttagcagaa
aaacgcaagaaccgcaaacgagggtga
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