Lacticaseibacillus paracasei ATCC 334: LSEI_1081
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Entry
LSEI_1081 CDS
T00407
Name
(GenBank) ATP-dependent DNA helicase, RecQ-like protein
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
lca
Lacticaseibacillus paracasei ATCC 334
Pathway
lca03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lca00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LSEI_1081
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lca03019
]
LSEI_1081
03400 DNA repair and recombination proteins [BR:
lca03400
]
LSEI_1081
Enzymes [BR:
lca01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
LSEI_1081
Messenger RNA biogenesis [BR:
lca03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
LSEI_1081
DNA repair and recombination proteins [BR:
lca03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
LSEI_1081
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
Helicase_C
HRDC
RecQ_Zn_bind
ResIII
HHH
TadB_TadC_N
Motif
Other DBs
NCBI-ProteinID:
ABJ69874
UniProt:
Q03A98
LinkDB
All DBs
Position
1065162..1066940
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AA seq
592 aa
AA seq
DB search
MIAPQAETILKEKFGYDHFRAGQNQAISRVLAGESTLVVMPTGGGKSLCYQIPAMLLSGL
TLVVSPLIALMKDQVDALNDNGIPAAFINSTLDYQEIADRLDQARSGQIKLLYVAPERFD
TDWFVQRLGSTDISLFAIDEAHCISQWGHDFRPSYLNLANVAAQLPSQPPVIALTATATP
RVAQDICQRLAIPADGMINTGFERSNLSFKVVRDQDEDRYLLDYLKLNVDQAGIIYASTR
KEVDRLYTFLAHKKLPVAKYHAGMSEAQRAANQEDFLFDRKPIMIATNAFGMGIDKSNVR
FVIHAQIPKDVESYYQEAGRAGRDGLPSEAILLFKPQDLQVQRFFIDQSEGDDEHKQRQY
EKLKMMERYANTDQCLQQFILNYFGQNGTKPCGRCSNCLDDRESVDVTVDAQKVLSCVVR
LHERFGKGVVAQVLAGAHNQRVLSFHLDQLSTYGLMSSRRQRDITTFIDFLAAGGYLETR
GGQYPTLGLTVKGAEVLRGQAQVFQKTAQKAEQHLEVDDTVFQELRSTRRQLAEQQHLPP
YMIFSDKTLKAIGSAMPQSLDELMAVKGVGQAKLDKYGQIFLDVLQAIKAKA
NT seq
1779 nt
NT seq
+upstream
nt +downstream
nt
atgattgcgccgcaagcggagacaattttaaaggaaaaatttggctatgatcattttcgt
gctggtcaaaatcaggccatcagtcgcgttttggctggtgaaagcacgctggttgtgatg
ccaacaggcggcgggaaatcgttgtgttatcagattccagcgatgttgttgtcgggattg
acgcttgtggtgtcgccgctcatcgcgttgatgaaggatcaggtggatgcgctgaacgat
aacgggattccggcggctttcattaacagcacgctcgattatcaggagattgctgatcgc
cttgatcaagcaagaagtggtcagattaaattattatatgttgccccagaacggtttgac
acggattggtttgtgcaacggcttggcagcaccgatatttcgttatttgcaattgatgaa
gcccattgtatttcccagtgggggcacgattttcgtccgagttatttgaatctggcgaat
gtggcggctcagttgccttcgcagccaccagtcattgccttaactgcgacggccacaccg
cgagttgcgcaggatatttgccagcgactggcgattccggctgacgggatgattaatact
ggttttgagcgaagtaatctgagcttcaaggtcgtacgcgatcaggacgaagatcggtat
ctattagattacctgaaactgaatgtcgatcaggcaggcatcatctatgccagcacccgt
aaagaagttgaccgtttgtatacctttttggcacataagaagttgcctgtggccaaatat
cacgcgggcatgagtgaagcgcagcgtgctgctaatcaggaagattttttgttcgatcgc
aaaccaattatgattgcaacgaatgcgttcggcatgggtattgataaaagcaacgtgcgg
tttgtcattcacgcccagattcccaaagatgtcgaatcgtattatcaagaagccggtcgg
gctggtcgtgatggcttgccgagtgaggcaattttgctgtttaagccgcaagatctccag
gttcagcggttcttcatcgatcaatccgaaggcgatgacgagcacaaacagcggcaatat
gagaagttgaaaatgatggaacggtatgcgaacacagatcagtgtttgcaacagtttatt
ttgaactatttcggtcaaaacgggacaaaaccatgtggtcggtgttcgaattgtttggat
gaccgggaatcagtggatgttacggttgatgcgcagaaggtcttatcttgtgtggttcgc
ttgcatgaacgttttggcaaaggcgttgtggcacaagtgttggctggggcccacaatcaa
cgggtattgtcgtttcatctagatcaattgtcaacttatgggctgatgagcagtcgtcgt
caacgcgacattacaaccttcatagattttctggcggctggcggttatttggaaactcgc
ggtggtcagtacccaactctgggcttaacggtcaaaggcgctgaggttcttcgcggacaa
gcgcaagtattccagaagacggcgcaaaaagccgagcagcatctcgaagtcgacgacact
gtctttcaggaactgcgcagtactcggcgacaactggcggagcagcagcatttaccgcct
tatatgattttctctgataagacgttgaaggcaattggcagcgccatgccgcaaagtctt
gatgagttgatggcagtcaaaggcgtcgggcaggcgaagttggataagtatggccaaatc
ttcttggatgtcctgcaggcgattaaggccaaggcttga
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