Lacticaseibacillus paracasei ATCC 334: LSEI_1298
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Entry
LSEI_1298 CDS
T00407
Name
(GenBank) RNase J1
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
lca
Lacticaseibacillus paracasei ATCC 334
Pathway
lca03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lca00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LSEI_1298
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lca03019
]
LSEI_1298
Messenger RNA biogenesis [BR:
lca03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
LSEI_1298
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
Lactamase_B
Lactamase_B_2
RMMBL
Anti-Pycsar_Apyc1
DUF4453
Motif
Other DBs
NCBI-ProteinID:
ABJ70081
UniProt:
Q039P1
LinkDB
All DBs
Position
complement(1280339..1282021)
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AA seq
560 aa
AA seq
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MKLNIKNNETAVFAVGGLGEIGKNMYGVQFQDEIIVIDAGIKFPEDDLLGIDYVISDYSY
LVQNKDKIKALVITHGHEDHIGGIPYFLQQVPNVPIYAGPLAAALIRGKLEEHGLLRTTK
LTEINEDTVLKFKKLSVEFFRTTHSIPDTLGIAVHTPQGIVIQTGDFKFDLTPVGDQPSP
NFQKMCRFAEEGVLVLMSDSTNAEVPTFTKSERFVGKSIRHIFDRIDGRIIFATFASNIS
RIAQAADAAMAHGRKIAVFGRSMETAMVNGRELGYLNIPDDVLIDAHQLNSMPADKVMIL
CTGSQGEPMAALSRIANGTHRQISIQPGDTVIFSSNPIPGNTVSVNHVINQLSEAGAEVI
HGKVNNVHTSGHGGQEDQKLMLRLIKPKFFMACHGEYRMQKIHCELAQQCGVPEKNCYIM
ENGDVLALTQDSARIAGHFPAGDVYIDGNGVGDIGNAVICDRRMLSEEGLVVVVATINMQ
KQAVLAGPDLLSRGFIYMRESGELINQAQRRVYRTIKSTFSSSEKVTEASLKDAITSNLQ
EFLFDKTERHPVILPMLILL
NT seq
1683 nt
NT seq
+upstream
nt +downstream
nt
atgaaattaaatattaagaataacgaaaccgccgtctttgctgtcggcggtttaggtgaa
attgggaagaacatgtacggggttcaattccaagatgaaatcatcgtgattgatgcaggg
atcaagttccctgaagatgatctgcttgggattgattatgtcatttccgattattcctac
ttggttcaaaacaaagacaagatcaaagcactggttattactcacggacatgaagatcat
attggtggtattccctacttcttacagcaggtaccgaatgtgccaatttacgctggtccg
ttagcagcagctttgattcgtggcaaacttgaagaacacggtttgttacgcactaccaaa
ttaactgaaattaacgaagacaccgtgttgaagttcaaaaaacttagtgttgagttcttc
cgcacgacccacagtattccggatacgctgggcatcgcggttcatacaccgcaaggcatc
gtcattcaaaccggggacttcaagtttgatctcacgccggttggcgatcagccatcccct
aacttccaaaaaatgtgccggttcgccgaagaaggcgtgctggtactgatgtcggattca
accaacgcggaagtaccgacatttactaagtcagaacgatttgttggcaagtcaattcgc
cacatttttgatcgaattgatggtcgcatcatatttgccacctttgcgtcaaacatttca
cggatcgcccaagcagctgatgcggcaatggcacacggtcgtaaaattgctgtttttggc
cgttcaatggaaactgcgatggtcaatggccgcgaacttggctaccttaacatccctgat
gacgtcttgattgatgcccatcaacttaattcgatgccagctgataaagtgatgatcctc
tgtaccggttcacaaggcgaaccaatggcagcgctgagccgaattgctaatggcacgcat
cgacaaatcagtattcaacctggggataccgtcatcttctccagtaatccgattcccggc
aatactgtcagtgttaatcacgtgatcaatcagctaagtgaagctggtgccgaggtcatc
catggcaaggtcaacaacgtccacacttccggtcatggcggtcaagaagaccagaagctt
atgttgcggctaatcaagccaaaattctttatggcctgccatggtgaataccggatgcaa
aagattcattgcgaacttgcccaacaatgcggcgtccctgaaaagaattgctacattatg
gaaaatggcgatgtattagcccttacgcaagatagtgctcgaattgcaggtcacttccct
gctggcgatgtttacattgatggtaatggtgtcggcgacatcggtaatgctgtcatttgc
gatcggcgcatgttgtctgaggaaggcttggttgtggtcgttgccacgatcaatatgcaa
aaacaagcggtcttagctggtcctgatctgctttctcgcggcttcatctatatgcgtgaa
tccggcgagttgattaatcaggctcagcggcgcgtctatcgcaccattaagtcaaccttc
tcaagcagtgaaaaggtgacggaagctagcttaaaagatgcaatcaccagcaacttgcaa
gaatttttgttcgacaaaacagaacgacacccggttattttaccgatgctgattttgctc
taa
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