Lacticaseibacillus paracasei ATCC 334: LSEI_1376
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Entry
LSEI_1376 CDS
T00407
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
lca
Lacticaseibacillus paracasei ATCC 334
Pathway
lca03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lca00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LSEI_1376
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lca03019
]
LSEI_1376
03400 DNA repair and recombination proteins [BR:
lca03400
]
LSEI_1376
Enzymes [BR:
lca01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
LSEI_1376
Messenger RNA biogenesis [BR:
lca03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
LSEI_1376
DNA repair and recombination proteins [BR:
lca03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
LSEI_1376
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
RecQ_Zn_bind
YBR126W-A
DUF7089
Motif
Other DBs
NCBI-ProteinID:
ABJ70154
UniProt:
Q039G8
LinkDB
All DBs
Position
1363879..1365288
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AA seq
469 aa
AA seq
DB search
MSQLEAQLQQHFGFQEFRPGQKALIQSVLDGHDTLGILPTGSGKSLCYQLPTLISNKPSL
IVEPLIALMNDQVGRLQAAGEKRVIALSAQMPPVAFTQILKRLASYHYIFVSPEILQRVD
VLMALKRLALGLFVVDEAHCISQWGPDFRPAYLQLGQVRQQLQADAILALTATAPEPVRR
DIVQHLSMQSPAILAGSVDRPNIFLGVETGLTDKEKALRLDQLLHEVVGPTIIYSATRAA
CETLAIRLQKAGHAAAFYHAGLDRHQRDLIQRQFQSDQLQIICATSAFGMGIDKANVRFV
VHTYVPESLEAYYQAIGRAGRDGKQSLAALLVTDHDVQHGAILAGMLPDAALIRLIYAHP
EAYRTFDDPQINLIEAYVDAGFSVEATQQQLQHRLTEKQASFAAMAAFVNESECRRAVLL
QHFDSPIEPHTALCCGEITTTILRQLQPEVPQEQPKLASWQAVFHQIFR
NT seq
1410 nt
NT seq
+upstream
nt +downstream
nt
gtgtcacaacttgaagcacaacttcaacaacattttggctttcaagaatttcgacctgga
caaaaggctttgatccaatcggtgttggatggacatgacacgctgggaattttacctact
ggcagcgggaaatcactctgttatcaattgccgactttgatcagtaacaagccaagttta
attgttgaaccgctcattgccttgatgaatgatcaagttggtcgtttgcaagcagctgga
gaaaaacgggtcattgccttgtcagcgcaaatgccaccggttgcttttacccaaattctc
aaacgattggcaagttaccactatatttttgtctcaccagaaattttacaacgcgttgat
gtgctcatggcgctcaaacgactggccctaggcttatttgtggtagatgaagcgcattgt
atctcacagtgggggccagattttcgacctgcttatttgcagctgggacaagttcgccaa
caattgcaagcagatgcgattcttgccttaaccgcaaccgcaccggaacccgttcgccgt
gacattgtccaacatctaagcatgcaatcgccagcaattttggctgggtcagtcgatcga
ccaaatattttccttggcgttgagaccggcttaacagataaggaaaaggctttaagactg
gatcagttattgcacgaggtggtggggccaacgatcatttatagtgctacccgagccgcg
tgtgagacgttagcgatacgattgcaaaaagccggccatgctgcggccttttatcatgct
gggttggatcggcaccaacgcgatctaatccagcgacagtttcaatcggatcagttgcag
attatctgtgcgacgagtgcgtttggcatggggatcgataaggcaaatgtacggttcgtc
gtgcatacctatgtgccggaatcgcttgaagcttattatcaggcaatcggacgagccggc
cgtgatggcaagcagagtctagcggcgcttttggtgaccgatcatgatgttcagcacggc
gctattttggcggggatgttgccagatgcggcattgattcggctcatctatgcgcatcct
gaggcgtatcgcacttttgacgatccgcagatcaacctgatcgaagcgtatgtagacgct
ggcttttcggtagaggctacgcagcagcaattacagcacagactaactgagaaacaggct
agtttcgcagcgatggcggcttttgttaatgaatcagaatgccgtcgtgctgttctgctg
caacattttgattcgccaattgaaccgcatacggctttgtgctgtggtgagatcaccact
acgatattgcgccaactacagcctgaagtgccgcaagaacaaccaaaattagcttcttgg
caggcagtatttcaccaaatctttagataa
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