Lacticaseibacillus paracasei ATCC 334: LSEI_1558
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Entry
LSEI_1558 CDS
T00407
Name
(GenBank) exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
lca
Lacticaseibacillus paracasei ATCC 334
Pathway
lca03410
Base excision repair
lca03430
Mismatch repair
lca03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
lca00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
LSEI_1558
03430 Mismatch repair
LSEI_1558
03440 Homologous recombination
LSEI_1558
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lca03400
]
LSEI_1558
DNA repair and recombination proteins [BR:
lca03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
LSEI_1558
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
LSEI_1558
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
LSEI_1558
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ssDNA-exonuc_C
RecJ_OB
DHH
DHHA1
Motif
Other DBs
NCBI-ProteinID:
ABJ70332
UniProt:
Q038P0
LinkDB
All DBs
Position
complement(1551211..1553505)
Genome browser
AA seq
764 aa
AA seq
DB search
MTQYQWQLAPQPAAADEHALSETLNVPPFLATLLLQRGINDQADYDAFVHPDTSRLHDPF
ALHDMDKAVARILKAIEQNEKITIYGDYDVDGLTSSAIMLETLQSLGADPDVFIPDRFTD
GYGPNAEVYAYLQKTGTQLVITVDNGVAGAAVIDPAQAAGMDVVVTDHHELPAKLPHAVA
VVHPRHPDGDYPFGDLSGAGVAFKVATALLGEPPLESVDLAALGTIADLVSLTDENRVIA
QLGLKMIQTQPRVGLAAILKEAGVAPETVNETTVGFVIGPRLNALGRMGDANPGVTLLTT
FEDDVAAELAEQVGKLNQERQGLVAKIAQEALTMAQAPENQAAKTLLLASKGWHEGVVGI
VASKVVEATGKPTLIMNIADDGETAKGSGRSIEAYHLFKALEPAKEHMVHFGGHHMAVGL
TAKTTDLPAIHAQMEAAAATMLKTVPKPTLPITTRLEDADLTLDHYQLIRQLAPFGQGNP
EPVFSVRPQVIQNVKQIGKENNHLRFQIDQGINVIGFGYGDAAETLATAQAVKLAVQLDQ
NTWQGHTSLQLMLKDYEVKQPQVIDWRMPTIDGGQFKASRTYVFFDAKVKQQFERQFSFG
GPTTIAAQVQAPLANAVLVDLPKDAAALHQVMQYVQPPVAVMFYGAPSRLVAIPTRAEFG
AVLRFLKAHPGFDKHHIPAIAKAVHLTVHQVILAVQVFFELDFVTIEGAFISPVTAPAKK
PLQTAKAYAARTAFLDLAQQLQTMPRAQLETMLLTEHSDSEVES
NT seq
2295 nt
NT seq
+upstream
nt +downstream
nt
atgacgcagtatcaatggcaactcgccccacaacctgcagcagctgatgagcatgctctt
agcgagacgttgaatgtcccaccatttttagcgaccttgttgctgcaacgcgggattaat
gatcaggcagattatgatgcgttcgtgcacccagacactagtcgattgcatgatccattc
gccttgcatgacatggataaagccgttgcccggattttgaaggcaattgagcaaaatgaa
aaaatcacgatttatggcgattacgatgttgatgggttgaccagcagtgccatcatgctt
gagaccttgcaaagtctgggcgccgatccggatgtgtttattcctgatcgcttcaccgat
ggttatgggccgaatgccgaagtttatgcttatttgcaaaaaactggcacacagttggta
atcaccgttgataacggtgtggctggtgccgcagtcatcgatccggcacaggctgcaggc
atggatgtggtggtgaccgatcatcacgagttgccagcaaagttgccgcatgcggtggcc
gttgttcatccacggcatccagatggcgattatccgttcggtgatctttctggggctggc
gttgcctttaaggttgcaacggccttattaggcgaaccaccgttagaaagcgttgacttg
gcagctttgggtaccattgctgatctggtcagcttaaccgatgaaaaccgggtgattgcg
caattaggactcaaaatgatccagactcagccacgggtcgggcttgcggctattttaaag
gaagccggtgttgccccggaaactgtgaatgaaacaacggtcggttttgtcatcggaccg
cggttgaatgcacttgggcggatgggcgacgcgaatcccggcgtaacgttgctgacgaca
tttgaggatgacgtagctgctgagttagccgaacaagtcggcaagctaaatcaggaacga
caaggattagttgcaaagatcgctcaggaagctttgacgatggcacaggcgccggaaaac
caagcggccaaaacattattgctggccagtaaaggttggcatgaaggggtcgtcgggatt
gtggccagcaaggttgtcgaagcaacaggcaagccaacgttaattatgaacattgcagat
gatggcgaaactgccaaaggctcaggtcgctcgattgaggcttatcatcttttcaaagct
ttagagccagcaaaggaacacatggtccattttggcggccatcatatggctgtcggtctc
acagctaaaacaacggatttaccagcgattcatgcacagatggaggcggctgcggcaaca
atgctgaaaactgttccgaaaccaacattgcctatcaccacgaggctggaagatgctgat
ttgacattggatcactatcaattgatccgtcagttggcaccgtttggtcaaggcaatccc
gaaccggttttctcagtacgcccgcaagttatccaaaatgtgaaacagattggtaaagaa
aacaatcacctgcgttttcaaatcgaccaaggcatcaatgtgattggttttggctatggt
gatgctgcggaaacactggcaacggcacaggccgttaaattggcagttcagctggatcaa
aacacttggcaaggtcataccagtctacaactcatgttgaaagactatgaagtcaaacag
ccgcaagtcattgactggcgaatgccaacgattgacggcggccagttcaaagccagccgc
acgtatgtgttttttgatgcgaaagtaaagcaacagtttgagcggcaattttcctttggt
gggccaacgaccatcgctgctcaggttcaagcgcctttagcgaatgcagttttagtcgac
ttgccaaaagatgctgccgcgttgcatcaggtgatgcagtatgtgcagccacctgttgcc
gtcatgttttacggcgcaccaagccgcttggttgctataccgacgcgggcagaatttggg
gccgtgttgcgttttctgaaggcccatcctgggttcgacaagcatcacattccagcgatt
gctaaggcggtccatttaactgtccatcaagtgatcttggcggttcaggtgttttttgaa
ctcgattttgttacaatagagggtgcttttatttctccagtcacagccccggcgaaaaag
ccgctgcaaacggcgaaggcttatgcagcgcgcacagcctttctagatctggcgcaacag
ttacagaccatgccgcgcgctcagcttgaaaccatgttgctgacggagcattcagacagt
gaggtagaatcatga
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