Legionella cardiaca: PXX05_01030
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Entry
PXX05_01030 CDS
T08869
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
lcad
Legionella cardiaca
Pathway
lcad02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
lcad00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
PXX05_01030 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lcad03021
]
PXX05_01030 (rpoD)
Transcription machinery [BR:
lcad03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
PXX05_01030 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_1
Sigma70_r1_2
HTH_11
HTH_20
TMPIT
Motif
Other DBs
NCBI-ProteinID:
WED43389
UniProt:
A0ABY8AUF5
LinkDB
All DBs
Position
complement(228264..230126)
Genome browser
AA seq
620 aa
AA seq
DB search
MNDQEQQHSQITKVIRLGKEQNYLTYAQINDLLPNIVDTEHFDVIISMLEGMNIKVFEVS
PSEDELALLGTTEEAPEDVEEAAAVLASVDKETGRTTDPVRMYMREMGTVELLTREGEIR
IAKRIEEGIYQVLKSLAHYPETVQLVLEDYDRVVTEEIRLSDIISGFADVEEEAPASNIG
SMLDESQQEELLLDELDEEGEEGEGGLSEADEGPNPEQAKVYFDDLRECFANAMSAMREH
GRTSAKTVAFLDAMSESFLKLKLTSRQVDRLTRHFRQLRNHIREFERTIMRLCIEKARIP
RKLFIDTFPGQETDLTWLETIISKHAKKLDMTRIEEYSEEIKRLQAKLASFEEEYGLIIS
EIKDINRKMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAV
DKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQILQETGR
EATPEELAEKMDLSEDKIRKVLKIAKEPISMETPVGDDDDSHLGDFIEDSNIESPIERAT
AEGLREATLEILETLTPREAKVLRMRFGIEMNTDHTLEEVGKQFDVTRERIRQIEAKALR
KLRHPSRSEKLRSFLEGDDN
NT seq
1863 nt
NT seq
+upstream
nt +downstream
nt
atgaatgatcaagaacagcagcactcgcaaatcacaaaagtcatccgtttagggaaagaa
caaaattacctaacttatgcacagattaatgatctgttacccaatatcgtcgataccgaa
cattttgatgtcatcatcagcatgttggaaggcatgaatattaaagtcttcgaggtatca
cccagtgaagatgaattagccctactcggcacaactgaagaggcacctgaagacgttgaa
gaagcagccgctgttcttgcttctgtcgacaaagaaacaggccgtactactgacccagtc
cgtatgtatatgcgggaaatgggaacagtcgagcttctcactcgtgaaggtgaaatccgc
attgccaaacgtatcgaagagggaatttatcaagtcctcaaatctctggcgcactaccca
gaaacagtacaattggttcttgaagattatgaccgcgttgtcactgaagaaattcgtctt
agcgatatcattagtggttttgctgatgtcgaagaagaagcacctgcatccaacattggc
tctatgcttgatgagtcacagcaggaagaacttcttcttgatgaacttgatgaagaaggc
gaagaaggtgaaggtggtcttagtgaagctgatgaaggccccaatcctgaacaagcgaaa
gtttatttcgacgatttacgtgaatgctttgcgaatgccatgagtgcaatgagagagcat
ggtcgcacgtcggcaaagacggttgcatttttagatgcaatgtctgaatctttcttgaaa
ttaaaactgacttcaagacaagttgaccgattaacacgccattttcgacaattgcgtaat
catattcgtgaattcgaacgcaccattatgcgtttatgtattgaaaaagcacgcattcct
cgtaagttgtttattgataccttccccggtcaggaaactgatttaacctggctggaaacc
atcattagcaagcatgcgaaaaaactcgacatgactcgcatcgaagagtacagcgaagaa
attaagcgcttacaagctaaactagccagcttcgaagaagaatatggtttgatcatcagt
gaaatcaaagacatcaaccgtaaaatgtctattggtgaagcgaaagccagacgtgctaaa
aaagaaatggttgaagccaacctgcgtttggttatttctatcgccaaaaaatacaccaac
cgcggtttacaattccttgatttgattcaggaaggaaatatcggcttgatgaaagcggtt
gacaagtttgaataccgccgtggctataagttttctacctatgccacctggtggattcgt
caagcaatcacccgttcaattgccgaccaggcacgaaccattcgtattccagtgcatatg
attgagacgattaacaaactcaatcgtatttcacgccagattctccaggaaacaggccgc
gaagcaacacctgaagaattggcagaaaaaatggatctgagcgaagacaagatacgaaaa
gtcttaaaaattgcgaaagaacccatttcaatggaaacccctgtgggtgatgacgacgac
tcacatttaggtgactttattgaagacagcaatatcgaatcacccattgagcgcgccaca
gccgaaggcttgcgtgaagcaacgctggaaattctggaaacgctaacaccacgcgaagcc
aaagtgttacgtatgcgcttcggtatcgaaatgaacaccgaccatacgttggaagaagta
ggtaaacaattcgacgtaacccgcgaacgtatccgccaaattgaagccaaggccctacgt
aaactacgtcacccatcacgctcagagaagctccgcagcttcctggaaggcgatgataac
tag
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