Legionella cardiaca: PXX05_14105
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Entry
PXX05_14105 CDS
T08869
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
lcad
Legionella cardiaca
Pathway
lcad03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lcad00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PXX05_14105 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lcad03019
]
PXX05_14105 (rnr)
03016 Transfer RNA biogenesis [BR:
lcad03016
]
PXX05_14105 (rnr)
Enzymes [BR:
lcad01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
PXX05_14105 (rnr)
Messenger RNA biogenesis [BR:
lcad03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
PXX05_14105 (rnr)
Transfer RNA biogenesis [BR:
lcad03016
]
Prokaryotic type
tRNA degradation factors
PXX05_14105 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
WHD_RNase_R
RNase_II_C_S1
OB_Dis3
Motif
Other DBs
NCBI-ProteinID:
WED43013
UniProt:
A0ABY8AR50
LinkDB
All DBs
Position
3237819..3239999
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AA seq
726 aa
AA seq
DB search
MSKKSKDPFYKREKEKYALPIPSRELIMQVLDEYGRPMSRNQLINKLEIANGAEQEALGF
RLKAMVRDGQIMQDRRGRFCLVGRINLQRGTVQGHPDGFGFFIPVDGGEDMILSAKEMQT
VMHGDVVLAYQTGVDRRGRPEGKIHEVLEHANQTVVGRFFTEHGVGFVIPDNKRLTQDIS
VPLEFAGNAKNGQMVLAEIVAFPTKRNQAIGKIIHILGEHMAPGMEIEVAIFAHGIPAQW
PEEVLAEVAKISQHVNEEEIKGRTDLRNLPFVTIDGEDAKDFDDAVYCYQKPKGGYQLYV
AIADVSHYVKVDSALDKEAAKRGNSVYFPGQVVPMLPEALSNGICSLNPHVDRLCMVAEM
AISTDGKITRSRFYRAVFHSHARLTYTQVGKWLEANADMGEHEELRPALEALNSLFNVLL
KARKSRGAIDFETTETSIEFDENRKIERIVPVMRNDAHRLIEECMLAANVATARFLEKAE
IPTLYRVHSLPDEDKINALRLFLGELGLRLGGGKKPHPKDFQKTMAEIGERPERHLIETV
MLRSLKQAQYIEENDGHFGLAYPAYTHFTSPIRRYPDLLIHRAIGHLIDNQEIVHFPYTK
EDMNRMGKHCSTTERRADEATREVISWLKCEYMQDKLGQVFEGTISAVTGFGIFVELNEI
YVEGLVHITSLRNDYYAFDAVKHRLVGERSGQVYRLGDKMSVMVARVDLDERKIDFEPVE
KEAVNE
NT seq
2181 nt
NT seq
+upstream
nt +downstream
nt
gtgagtaaaaaatcgaaggatcctttctataaaagggaaaaagaaaaatatgcgcttcct
atacctagtcgcgaattaattatgcaggtattggatgaatatggtcgtcccatgtctcgc
aatcaattaattaataagcttgaaattgccaatggtgcggagcaggaagcattaggattt
cgcttaaaggcaatggtgcgagatgggcagattatgcaagatagacgaggacgcttctgc
ctggttggtcggattaacttgcaaagaggtactgtacaagggcatccagatgggtttgga
ttttttattcctgtagatggcggtgaggacatgattctatccgccaaagaaatgcaaact
gttatgcatggggatgtggttcttgcttatcagacaggagttgataggcgaggtagaccc
gaaggtaaaattcatgaagtacttgagcatgctaaccaaacggtggtaggcagatttttt
acagaacatggtgtaggatttgtcattccagataataaacgtttgacccaagatatttca
gtgccacttgaatttgctgggaatgctaagaatggtcaaatggttttggcggaaatagtg
gcgtttccaacaaaacgtaatcaggccattggtaagataattcacattctaggagagcac
atggctccaggaatggaaattgaggtggccatttttgctcatggaattcccgcacagtgg
cctgaagaagtgctcgctgaagtggcaaaaatttcacaacatgttaatgaagaagagatt
aaaggtcgcactgatttaagaaatttaccttttgttaccattgatggtgaagatgctaaa
gattttgatgacgcagtttattgttatcaaaaacctaaaggaggctaccagctttacgtg
gcaattgccgacgttagtcattatgttaaggttgattcagccttggataaggaagctgca
aagcgtggtaattctgtttattttcctggccaggtagtacctatgttaccagaggctttg
tctaatggtatttgttcgttaaatccccatgttgacagattatgcatggttgctgaaatg
gcgatttcgaccgatggcaaaataacgcgttcccgcttttatcgtgcggtctttcactct
catgcccgtcttacttacactcaagtcggtaaatggctggaagcaaatgcggatatggga
gagcatgaggagttaagaccagcacttgaggcgcttaattctctctttaatgttttatta
aaagcacgtaagagtcgaggcgctattgattttgagaccacagaaaccagcattgaattt
gacgaaaatagaaaaatagaacgaattgtacctgttatgcgaaatgacgcgcatcggttg
attgaagaatgtatgctggctgccaatgtcgccacggcgcgctttttagaaaaagcagaa
atacctactttatatcgtgtccactcattgcctgatgaagataaaattaatgcacttcgt
ctttttcttggggaacttgggttaaggttaggtggtggaaaaaaaccgcacccgaaagat
tttcaaaagactatggctgagataggcgagcgaccagaaagacatttaattgaaacagtc
atgctacgttcattaaaacaagcacaatatattgaagagaatgatgggcatttcggtctg
gcatatcctgcttatacccattttacctcgcctattcgtcgttaccctgacttattgatt
catcgagctatcggacatttgattgataatcaagaaatagttcattttccttacactaag
gaggatatgaatcgtatgggtaagcattgctccacaacagaaagacgtgctgatgaagca
acccgcgaagtaatttcttggttaaaatgtgaatacatgcaagataaattgggccaggta
tttgaaggtactatttccgctgtgaccggttttggtatttttgttgaactcaatgaaatt
tatgttgaaggtttagtacatattacctcattgcgaaatgattattatgcttttgatgca
gttaagcatcgtttagttggagaacgtagcggccaggtttatcgcttaggagataaaatg
tcagtcatggtggcccgcgttgatcttgatgagcgtaaaattgattttgaacctgtagaa
aaagaggccgtgaatgagtga
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