Leisingera caerulea: K3721_09650
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Entry
K3721_09650 CDS
T08528
Name
(GenBank) Rne/Rng family ribonuclease
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
lcae
Leisingera caerulea
Pathway
lcae03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lcae00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
K3721_09650
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lcae03019
]
K3721_09650
03009 Ribosome biogenesis [BR:
lcae03009
]
K3721_09650
Enzymes [BR:
lcae01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
K3721_09650
Messenger RNA biogenesis [BR:
lcae03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
K3721_09650
Ribosome biogenesis [BR:
lcae03009
]
Prokaryotic type
rRNA processing factors
K3721_09650
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
DnaJ_CXXCXGXG
Motif
Other DBs
NCBI-ProteinID:
UWQ52317
UniProt:
A0A9Q9HHI7
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All DBs
Position
complement(1958208..1961237)
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AA seq
1009 aa
AA seq
DB search
MAKKMLIDATHAEETRVVVVDGNKVEEFDFESENKRQLAGNIYLAKVTRVEPSLQAAFVD
YGGNRHGFLAFSEIHPDYYQIPVADREALMEEERAYAEAMRARDEEEDEKPSKPKRARKS
RSAAKAAKAASGDAVETKEVDASEEKTGEIAGMETIDLSDSAEAADVPAELAEVPEGSSP
VERVAETPVEEPEDEGEAPAEPAAAEAPAEAGEETAAEAVEESAPAEEAAAEETAEEAGD
ASGEAEAGTGAEEAKAETASDDAAGEEGEENGEPRRADATSKDENIESVADEDDSEDIRP
PRKPRPRRYKIQEVIKVRQVLLVQVVKEERGNKGAALTTYLSLAGRYCVLMPNTARGGGI
SRKITNAADRKKLKDIASELDVPTGAGLIVRTAGAKRTKAEIKRDYEYLQRLWEQIRELT
LKSIAPAKIYEEGDLIKRSIRDLYNREIDEVLVEGDRGYRIAKDFMKMIMPSHAKNVKHY
QDALPLFARYQVESYLGGMFNPVVQLKSGGYIVIGVTEALVAIDVNSGRATKEASIEETA
LKTNLEAAEEVARQLRLRDLAGLIVIDFIDMDERKNNAAVEKRMKDKLKTDRARIQVGRI
SGFGLMEMSRQRLRPGMIEATTAPCPHCHGTGLIRSDDSMALSILRQIEEEGTRRRSREV
LVRCPVSIANFLMNQKREHIAQIEARYGLSVRIEGDAHLVSPDFVLEKFKTASRTVPAAT
APVVSVDTSIMDQVDAEEATQDEDEAPAAAEALETAEDTAPQDDKPKRKRRRRRRRKSGN
GDQAQAGENGEETSEDQDQPKEEAGEAQEAASEAEEPAAEEVKEKKPSRTRTRSRSRKPK
AKQAEADSAEADNAETGAAVESSDAAQEDAPAAAEVAEAPAAETAADVPAEETAEHAAAA
VADSAGDTAAGDAEPAEASDQATPAAEPAAAEDAAPSEEAVEAVEEQPAEETAAEAAGEQ
PAVKEAAQLEPVAAEEEKQPEPAMAGAGSEPEPAAPPKPKRRGWWSMGG
NT seq
3030 nt
NT seq
+upstream
nt +downstream
nt
atggcaaagaagatgcttattgacgccacccacgcggaagaaacccgcgttgtggtggtc
gatggaaacaaggttgaggagttcgactttgaatccgaaaacaaacgccagcttgctggc
aatatctatctcgcaaaggtaaccagggtcgagccgtcgcttcaggcggcgtttgtcgac
tatggcggcaaccgccacggcttcctggcgttctcggaaatccacccggattattaccag
atccccgtcgcggaccgtgaggccctgatggaggaagaacgcgcctatgccgaggcgatg
cgcgcccgcgacgaggaagaggacgaaaaaccgtccaagccgaagcgcgcccgcaagtcc
cggtccgccgccaaagcggccaaggctgcttccggtgacgcggtggagaccaaggaggtt
gacgcctcggaggaaaaaaccggtgaaatcgccgggatggaaaccatcgacctgagcgac
agcgccgaagccgcggacgtgcctgcggaactggccgaggtgcccgaaggctcctcgccg
gtggaacgtgtcgcggaaactccggtggaagagccggaagacgaaggcgaagccccggct
gagccggcggcagcggaagctcctgcagaggcaggcgaagagactgcggccgaggcggtt
gaagagtccgctcctgctgaagaggccgccgcggaagaaactgcagaagaggccggtgac
gcgtctggtgaagctgaagccggaacgggcgcagaagaagccaaggctgaaaccgccagc
gacgacgctgccggtgaggaaggcgaggaaaacggcgaaccccgccgggctgacgccaca
tccaaggacgagaacatcgagtccgtcgctgacgaagacgacagcgaggacatccgcccg
ccgcgcaagccgcgcccgcgccgctacaagatccaggaagtgatcaaggtgcgccaggtg
ctgctggtgcaggtcgtcaaggaagagcgcggcaacaagggcgcggcgctgaccacctac
ctgtcgctggcaggccgctactgcgtgctgatgccgaacaccgcccgcggcggcggcatc
tcccgcaagatcaccaatgctgccgaccgcaagaaactcaaggacattgcctccgaactg
gacgtgccgaccggcgcgggcctgatcgtgcgcacagccggggccaaacgcaccaaggcg
gagatcaagcgcgattacgaatacctgcagcgcctgtgggaacagatccgcgagctgacg
ctgaaatccatcgcgccggccaagatctatgaggaaggcgacctgatcaaacgctcgatc
cgcgacctgtacaaccgcgagatcgacgaggttctggtggaaggcgaccgcggctaccgc
atcgccaaggacttcatgaagatgatcatgccgtcccacgccaagaacgtgaagcattac
caagacgcgctgccgctgttcgcccgctaccaggtcgaaagctacctgggcggcatgttc
aacccggtggtgcagctgaagtccggcggctatatcgtgatcggcgtgaccgaagcgctg
gtggcgatcgacgtcaactccggccgtgccaccaaggaagcctcgatcgaggaaaccgcg
ctcaagaccaacctggaggctgccgaagaagtggcgcgccagctgcgtctgcgcgacctt
gcgggcctgatcgtgatcgacttcatcgacatggacgagcgcaagaacaacgccgccgtc
gaaaagcgcatgaaggacaagctgaagaccgaccgcgcccgtattcaggtgggccggatc
tcgggcttcggcctgatggaaatgtcgcgccagcggctgcgccccggcatgatcgaggcg
accaccgcgccttgtccgcattgccatggcaccggcctgatccgttccgacgattcgatg
gcgctgtcgatcctgcgccagatcgaggaagagggcacccgccgccgctcccgcgaggtg
ctggtgcgctgcccggtgtccattgccaacttcctgatgaaccagaaacgcgagcatatc
gcccagatcgaggcgcgttacggcctgtccgtgcgcatcgaaggcgacgcgcatctggtc
agcccggactttgtgctggagaagtttaagaccgcgtcccgcactgtgcctgcggccact
gctccggttgtgtcggttgatacctcgatcatggatcaggtggacgcggaggaagccacg
caagacgaggacgaggcacctgccgccgctgaggcgcttgagaccgccgaagacacggca
ccgcaggacgacaagcccaagcgcaagcgccgccgccgccgccgccggaagtccggcaac
ggcgaccaggcccaggcgggcgagaacggcgaggagacgtccgaagatcaggaccagccc
aaggaagaggccggcgaagcgcaggaagctgcctctgaggcggaggagcctgcggcagaa
gaggtgaaggagaagaaaccgtcccgcacccgtacccggtcccgttcgcgcaagccgaaa
gccaaacaggccgaggcggacagtgccgaagcggacaacgcagagaccggtgccgctgtt
gagagctccgatgccgctcaagaggatgctccggccgcggctgaagttgccgaagcgcct
gccgcagaaacagctgcggacgttccggctgaggagacggcagaacacgcagctgctgcg
gttgcggacagcgcgggggacaccgccgccggggacgcagaacctgctgaggcatctgat
caggccactccggcagcagaaccggccgctgctgaagacgccgcgccgtctgaggaggct
gtggaagcggtcgaggagcagcctgctgaagaaaccgctgcagaagccgctggggagcag
cctgctgtgaaagaggccgcgcagctggaacctgttgccgcggaagaggaaaagcagccg
gagcctgccatggccggcgccgggtcagagccggaacccgcagccccgcctaaaccgaaa
cgccgaggctggtggtcgatgggcggttga
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