KEGG   Leisingera caerulea: K3721_09650
Entry
K3721_09650       CDS       T08528                                 
Name
(GenBank) Rne/Rng family ribonuclease
  KO
K08300  ribonuclease E [EC:3.1.26.12]
Organism
lcae  Leisingera caerulea
Pathway
lcae03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:lcae00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    K3721_09650
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:lcae03019]
    K3721_09650
   03009 Ribosome biogenesis [BR:lcae03009]
    K3721_09650
Enzymes [BR:lcae01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.26  Endoribonucleases producing 5'-phosphomonoesters
    3.1.26.12  ribonuclease E
     K3721_09650
Messenger RNA biogenesis [BR:lcae03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     K3721_09650
Ribosome biogenesis [BR:lcae03009]
 Prokaryotic type
  rRNA processing factors
   K3721_09650
SSDB
Motif
Pfam: RNase_E_G RNase_E_G_Thio S1 DnaJ_CXXCXGXG
Other DBs
NCBI-ProteinID: UWQ52317
UniProt: A0A9Q9HHI7
LinkDB
Position
complement(1958208..1961237)
AA seq 1009 aa
MAKKMLIDATHAEETRVVVVDGNKVEEFDFESENKRQLAGNIYLAKVTRVEPSLQAAFVD
YGGNRHGFLAFSEIHPDYYQIPVADREALMEEERAYAEAMRARDEEEDEKPSKPKRARKS
RSAAKAAKAASGDAVETKEVDASEEKTGEIAGMETIDLSDSAEAADVPAELAEVPEGSSP
VERVAETPVEEPEDEGEAPAEPAAAEAPAEAGEETAAEAVEESAPAEEAAAEETAEEAGD
ASGEAEAGTGAEEAKAETASDDAAGEEGEENGEPRRADATSKDENIESVADEDDSEDIRP
PRKPRPRRYKIQEVIKVRQVLLVQVVKEERGNKGAALTTYLSLAGRYCVLMPNTARGGGI
SRKITNAADRKKLKDIASELDVPTGAGLIVRTAGAKRTKAEIKRDYEYLQRLWEQIRELT
LKSIAPAKIYEEGDLIKRSIRDLYNREIDEVLVEGDRGYRIAKDFMKMIMPSHAKNVKHY
QDALPLFARYQVESYLGGMFNPVVQLKSGGYIVIGVTEALVAIDVNSGRATKEASIEETA
LKTNLEAAEEVARQLRLRDLAGLIVIDFIDMDERKNNAAVEKRMKDKLKTDRARIQVGRI
SGFGLMEMSRQRLRPGMIEATTAPCPHCHGTGLIRSDDSMALSILRQIEEEGTRRRSREV
LVRCPVSIANFLMNQKREHIAQIEARYGLSVRIEGDAHLVSPDFVLEKFKTASRTVPAAT
APVVSVDTSIMDQVDAEEATQDEDEAPAAAEALETAEDTAPQDDKPKRKRRRRRRRKSGN
GDQAQAGENGEETSEDQDQPKEEAGEAQEAASEAEEPAAEEVKEKKPSRTRTRSRSRKPK
AKQAEADSAEADNAETGAAVESSDAAQEDAPAAAEVAEAPAAETAADVPAEETAEHAAAA
VADSAGDTAAGDAEPAEASDQATPAAEPAAAEDAAPSEEAVEAVEEQPAEETAAEAAGEQ
PAVKEAAQLEPVAAEEEKQPEPAMAGAGSEPEPAAPPKPKRRGWWSMGG
NT seq 3030 nt   +upstreamnt  +downstreamnt
atggcaaagaagatgcttattgacgccacccacgcggaagaaacccgcgttgtggtggtc
gatggaaacaaggttgaggagttcgactttgaatccgaaaacaaacgccagcttgctggc
aatatctatctcgcaaaggtaaccagggtcgagccgtcgcttcaggcggcgtttgtcgac
tatggcggcaaccgccacggcttcctggcgttctcggaaatccacccggattattaccag
atccccgtcgcggaccgtgaggccctgatggaggaagaacgcgcctatgccgaggcgatg
cgcgcccgcgacgaggaagaggacgaaaaaccgtccaagccgaagcgcgcccgcaagtcc
cggtccgccgccaaagcggccaaggctgcttccggtgacgcggtggagaccaaggaggtt
gacgcctcggaggaaaaaaccggtgaaatcgccgggatggaaaccatcgacctgagcgac
agcgccgaagccgcggacgtgcctgcggaactggccgaggtgcccgaaggctcctcgccg
gtggaacgtgtcgcggaaactccggtggaagagccggaagacgaaggcgaagccccggct
gagccggcggcagcggaagctcctgcagaggcaggcgaagagactgcggccgaggcggtt
gaagagtccgctcctgctgaagaggccgccgcggaagaaactgcagaagaggccggtgac
gcgtctggtgaagctgaagccggaacgggcgcagaagaagccaaggctgaaaccgccagc
gacgacgctgccggtgaggaaggcgaggaaaacggcgaaccccgccgggctgacgccaca
tccaaggacgagaacatcgagtccgtcgctgacgaagacgacagcgaggacatccgcccg
ccgcgcaagccgcgcccgcgccgctacaagatccaggaagtgatcaaggtgcgccaggtg
ctgctggtgcaggtcgtcaaggaagagcgcggcaacaagggcgcggcgctgaccacctac
ctgtcgctggcaggccgctactgcgtgctgatgccgaacaccgcccgcggcggcggcatc
tcccgcaagatcaccaatgctgccgaccgcaagaaactcaaggacattgcctccgaactg
gacgtgccgaccggcgcgggcctgatcgtgcgcacagccggggccaaacgcaccaaggcg
gagatcaagcgcgattacgaatacctgcagcgcctgtgggaacagatccgcgagctgacg
ctgaaatccatcgcgccggccaagatctatgaggaaggcgacctgatcaaacgctcgatc
cgcgacctgtacaaccgcgagatcgacgaggttctggtggaaggcgaccgcggctaccgc
atcgccaaggacttcatgaagatgatcatgccgtcccacgccaagaacgtgaagcattac
caagacgcgctgccgctgttcgcccgctaccaggtcgaaagctacctgggcggcatgttc
aacccggtggtgcagctgaagtccggcggctatatcgtgatcggcgtgaccgaagcgctg
gtggcgatcgacgtcaactccggccgtgccaccaaggaagcctcgatcgaggaaaccgcg
ctcaagaccaacctggaggctgccgaagaagtggcgcgccagctgcgtctgcgcgacctt
gcgggcctgatcgtgatcgacttcatcgacatggacgagcgcaagaacaacgccgccgtc
gaaaagcgcatgaaggacaagctgaagaccgaccgcgcccgtattcaggtgggccggatc
tcgggcttcggcctgatggaaatgtcgcgccagcggctgcgccccggcatgatcgaggcg
accaccgcgccttgtccgcattgccatggcaccggcctgatccgttccgacgattcgatg
gcgctgtcgatcctgcgccagatcgaggaagagggcacccgccgccgctcccgcgaggtg
ctggtgcgctgcccggtgtccattgccaacttcctgatgaaccagaaacgcgagcatatc
gcccagatcgaggcgcgttacggcctgtccgtgcgcatcgaaggcgacgcgcatctggtc
agcccggactttgtgctggagaagtttaagaccgcgtcccgcactgtgcctgcggccact
gctccggttgtgtcggttgatacctcgatcatggatcaggtggacgcggaggaagccacg
caagacgaggacgaggcacctgccgccgctgaggcgcttgagaccgccgaagacacggca
ccgcaggacgacaagcccaagcgcaagcgccgccgccgccgccgccggaagtccggcaac
ggcgaccaggcccaggcgggcgagaacggcgaggagacgtccgaagatcaggaccagccc
aaggaagaggccggcgaagcgcaggaagctgcctctgaggcggaggagcctgcggcagaa
gaggtgaaggagaagaaaccgtcccgcacccgtacccggtcccgttcgcgcaagccgaaa
gccaaacaggccgaggcggacagtgccgaagcggacaacgcagagaccggtgccgctgtt
gagagctccgatgccgctcaagaggatgctccggccgcggctgaagttgccgaagcgcct
gccgcagaaacagctgcggacgttccggctgaggagacggcagaacacgcagctgctgcg
gttgcggacagcgcgggggacaccgccgccggggacgcagaacctgctgaggcatctgat
caggccactccggcagcagaaccggccgctgctgaagacgccgcgccgtctgaggaggct
gtggaagcggtcgaggagcagcctgctgaagaaaccgctgcagaagccgctggggagcag
cctgctgtgaaagaggccgcgcagctggaacctgttgccgcggaagaggaaaagcagccg
gagcctgccatggccggcgccgggtcagagccggaacccgcagccccgcctaaaccgaaa
cgccgaggctggtggtcgatgggcggttga

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