Leisingera caerulea: K3721_16015
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Entry
K3721_16015 CDS
T08528
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
lcae
Leisingera caerulea
Pathway
lcae03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
lcae00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
K3721_16015 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lcae03021
]
K3721_16015 (rpoB)
03400 DNA repair and recombination proteins [BR:
lcae03400
]
K3721_16015 (rpoB)
Enzymes [BR:
lcae01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
K3721_16015 (rpoB)
Transcription machinery [BR:
lcae03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
K3721_16015 (rpoB)
DNA repair and recombination proteins [BR:
lcae03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
K3721_16015 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_3
RNA_pol_Rpb2_2
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
RnfC_N
Motif
Other DBs
NCBI-ProteinID:
UWQ53469
UniProt:
A0A9Q9M2F4
LinkDB
All DBs
Position
complement(3292457..3296593)
Genome browser
AA seq
1378 aa
AA seq
DB search
MAQSFLGQKRLRKYYGKIREVLEMPNLIEVQKSSYDLFLRSGDDVEPLDGEGIKGVFQSV
FPIKDFNETSVLEFVKYSFEKPKYDVEECMQRDMTYSAPLKVTLRLIVFDVDEDTGAKSV
KDIKEQDVFMGDMPLMTPNGTFIVNGTERVIVSQMHRSPGVFFDHDKGKTHSSGKLLFAC
RIIPYRGSWLDFEFDAKDIVFARIDRRRKLPVTTLLYALGLDQEGIMDAYYNTVNFKLEK
SRGWVTPFFPERVRGTRPTYDLVDAATGEIICEAGKKVTPRAVKKMIEEGTITELLVPFE
HIVGKFVAKDIINEDNGAIYVEAGDELTLEYDKDGELIGGSLKELLDAGITDIPVLDIDN
VNVGPYMRNTMAQDKNRTRESALMDIYRVMRPGEPPTVEAASALFDTLFFDSERYDLSAV
GRVKMNMRLALDAEDTQRTLRKEDIVACVKALVDLRDGRGDIDDIDHLGNRRVRSVGELM
ENQYRVGLLRMERAIKERMSSVEIDTVMPQDLINAKPAAAAVREFFGSSQLSQFMDQTNP
LSEVTHKRRLSALGPGGLTRERAGFEVRDVHPTHYGRMCPIETPEGPNIGLINSLATFAR
VNKYGFIETPYRVVKEGQVTDEVHYMSATEEMRHTVAQANASLDENGKFINDLVSTRQSG
DYTLAPNESVDLIDVSPKQLVSVAASLIPFLENDDANRALMGSNMQRQAVPLLRAEAPLV
GTGIEEKVAIDSGAAIQAKRAGIIDQVDAQRIVIRATEDLELGDAGVDIYRMRKFQRSNQ
NTCINQRPLVKVGDTVTKGEVIADGPSTDMGELALGKNVVVAFMPWNGYNYEDSILISER
IARDDVFTSVHIEEFEVAARDTKLGPEEITRDIPNVGEEALRNLDEAGIVYIGADVEPGD
ILVGKITPKGESPMTPEEKLLRAIFGEKASDVRDTSLRVKPGDYGTVVEVRVFNRHGVEK
DERALQIEREEVERLARDRDDELAILDRNIYARLRGMLLGKVAVKGPKGVRAGTEITEDL
LDSLSRGQWWMLALEDEQDAQVVEALNEQYEAQKRALDARFEDKVEKVRRGDDLPPGVMK
MVKVFIAVKRKLQPGDKMAGRHGNKGVISKVVPMEDMPFLADGTPVDFCLNPLGVPSRMN
VGQILETHMGWAARGLGIKVDEALQEYRRSGDLTPVREAMHHAYGDDVYDEGIANMSEAA
LVEAAGNVSRGVPIATPVFDGAKEDDVNDALVRAGFDQSGQSILFDGRTGEQFARPVTVG
IKYLLKLHHLVDDKIHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQ
EMLTVKSDDVAGRTKVYESIVKGEDNFEAGVPESFNVLVKEVRGLGLNMELLDAEVEE
NT seq
4137 nt
NT seq
+upstream
nt +downstream
nt
atggctcaatcgttccttggccagaaacgtctacgtaaatactacggcaaaatccgcgaa
gtgctggaaatgccgaacctcattgaggtgcagaaatcctcctacgatctgttcctgcgc
tccggcgatgacgtcgagccgcttgacggcgaaggcatcaaaggtgtgttccagtcggtc
ttcccgatcaaggacttcaacgaaacctccgttctggaattcgtgaagtactcgtttgaa
aagccgaaatacgacgtcgaagagtgcatgcagcgcgatatgacctacagcgcgccgctg
aaggtcaccctgcgcctgatcgtgtttgatgtcgacgaggacaccggcgccaagtcggtg
aaggacatcaaggagcaggacgtcttcatgggcgacatgcccctgatgaccccgaacggc
acctttattgtgaacggcaccgagcgcgtgatcgtgtcccagatgcaccgctcgccgggc
gtgttcttcgaccacgacaagggcaagactcactcctcgggcaagctgctgtttgcctgc
cgcatcatcccgtaccgcggctcctggctggacttcgaattcgacgccaaagacatcgtc
tttgcccgtatcgaccgtcgccgcaagctgccggtgaccaccctgctgtacgccctgggc
ctggaccaggaaggcatcatggatgcctactacaacaccgtcaacttcaagcttgagaag
tcccgcggctgggtcacccccttcttccccgagcgtgtgcgcggcacccgcccgacctat
gacctggtggacgctgccactggcgagatcatctgcgaagcgggcaagaaagtcaccccg
cgcgcggttaagaagatgatcgaggaaggcaccatcaccgagctgctggtgccctttgag
cacatcgtcggcaagttcgtcgccaaggacatcatcaacgaagacaacggcgcgatctac
gtcgaggccggcgatgagctgaccctcgaatacgacaaggacggcgaattgatcggcggc
tccctgaaagagctgctggatgccggcatcaccgacatcccggtgctggacatcgacaac
gtcaacgtcggcccctacatgcgcaacactatggcgcaggacaagaaccggacccgcgaa
agcgcgctcatggacatctaccgtgtgatgcgcccgggcgagccgcccaccgtcgaggcc
gcttcggcactgttcgacaccctgttcttcgactccgagcgttatgacctgtccgccgtt
ggccgcgtgaagatgaacatgcgcctggcgctcgacgccgaggacacccagcgcaccctg
cgcaaggaagacatcgtcgcctgtgtcaaggcgctggttgacctgcgcgacggccgcggc
gatatcgacgacatcgaccacctcggcaaccgccgcgtgcggtccgtcggcgagctgatg
gaaaaccagtaccgcgtcggccttctgcgcatggagcgtgcgatcaaggagcggatgtcc
tccgtcgagatcgacaccgtgatgccgcaggatctgatcaacgcgaaaccggcagctgct
gccgtgcgtgaattcttcggctcctcgcagctgtcgcagttcatggaccagaccaacccg
ctgtctgaagtcacccacaaacgccgcctgtcggcgcttggcccgggcggcctgacccgc
gagcgtgcaggctttgaggtccgcgacgttcacccgacccactatggccggatgtgcccg
attgagactccggaaggcccgaacatcggtctgatcaactcgctggcgacctttgcacgc
gtcaacaagtacggcttcatcgaaacgccctatcgcgtggtgaaagaaggacaggtgacc
gacgaggtccactacatgtccgccaccgaagaaatgcgtcacaccgtggcgcaggcgaac
gcgtccctggacgagaacggcaagttcatcaacgacctggtgtccacccgtcagtcgggt
gactacaccctggcgccgaacgaaagcgtcgacctgatcgacgtcagccccaagcagctg
gtctcggttgcggcctcgctgatcccgttcctggaaaacgacgacgccaaccgcgctctg
atgggctcgaacatgcagcgtcaggcggttccgctgctgcgcgcagaggcgccgctggtc
ggcaccggcatcgaagagaaagttgcgatcgactccggcgcggccatccaggcgaaacgc
gcgggcatcatcgaccaggtcgatgcgcagcgtatcgtgatccgggccaccgaggacctg
gaactgggcgacgcgggtgtggacatctaccgcatgcgcaagttccagcgctcgaaccag
aacacctgcatcaaccagcgtccgctggtgaaggtgggcgacaccgtgaccaagggcgaa
gtcatcgccgacggtccgtcgaccgacatgggcgaactggctctgggcaagaacgtggtc
gtcgcgtttatgccgtggaacggctacaactatgaagactccatcctgatctccgagcgc
atcgcgcgtgacgacgtcttcacctcggtccatatcgaggaattcgaagtcgccgcccgt
gacaccaagctcgggccggaagaaatcacccgcgacatccccaacgtcggcgaggaagcc
ttgcgcaacctcgacgaggcgggcatcgtctacatcggcgccgatgtggagccgggcgac
attctggtcggcaagatcactccgaagggcgaaagcccgatgaccccggaagagaagctg
ctgcgcgccatcttcggcgagaaggcttcggacgtgcgcgacacctcgctgcgcgtgaag
ccgggcgactacggcaccgtggtcgaggtgcgcgtcttcaaccgccacggtgtggagaaa
gatgagcgtgcgctgcagatcgagcgtgaggaagttgagcgtctggcccgtgaccgggac
gacgaactcgcgatcctggaccgcaacatctatgcccgcctgcgcggcatgctgctgggc
aaagtggccgttaaaggcccgaaaggcgtgcgtgccggcaccgaaatcaccgaagatctg
ctggactccctgtcccgcggtcagtggtggatgctggcgctggaagacgagcaggacgct
caggtggtcgaggccttgaacgagcaatacgaggcgcagaagcgcgccctggatgcccgc
ttcgaggacaaggtcgagaaggtccgccgcggcgacgacctgccgccgggtgtgatgaag
atggtcaaggtcttcatcgcggtgaagcgcaagctgcagccgggcgacaagatggccggc
cgtcacggcaacaaaggtgtgatctcgaaagttgtgccgatggaggacatgccgttcctc
gccgacggcaccccggtcgacttctgcctcaacccgctgggcgtgccgtcgcgtatgaac
gtcggtcagatcctcgaaacccacatgggctgggccgcgcgcggcctcggcatcaaggtg
gacgaggcgctgcaggaataccgccgttccggcgacctgaccccggtccgtgaagcgatg
caccacgcctatggcgatgatgtctatgacgagggcattgccaacatgtccgaagctgct
ctggttgaggccgcaggcaacgtgtcccgcggtgtgccgattgcgaccccggtctttgac
ggcgccaaggaagacgatgtgaacgacgccctggtgcgtgcgggctttgaccagtccggc
cagtcgatcctgttcgacggccgcaccggcgagcagttcgcgcgtccggtcaccgtcggc
atcaagtacctgctgaagctgcaccacctggtggacgacaagatccacgcgcgttccacc
ggcccgtactcgctggttacccagcagccgctgggcggtaaggcgcagttcggcggtcag
cgctttggtgagatggaagtctgggctctggaagcctatggcgccgcctacaccctgcag
gagatgctcaccgtgaaatcggatgacgttgcaggccggactaaggtctatgaatcgatc
gtcaagggcgaggacaactttgaagcgggcgtaccggaatcgtttaacgttctggtgaaa
gaagtccgcggcctcggcctgaatatggaactcctggatgcggaggttgaggagtaa
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