Lichenostomus cassidix (helmeted honeyeater): 146424421
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Entry
146424421 CDS
T12101
Symbol
SKIC3
Name
(RefSeq) superkiller complex protein 3 isoform X1
KO
K12600
superkiller protein 3
Organism
lcai Lichenostomus cassidix (helmeted honeyeater)
Pathway
lcai03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lcai00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
146424421 (SKIC3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lcai03019
]
146424421 (SKIC3)
Messenger RNA biogenesis [BR:
lcai03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ski complex
146424421 (SKIC3)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TPR_19
TPR_1
TPR_14
TPR_2
TPR_16
TPR_11
TPR_12
TPR_8
TPR_CcmH_CycH
TPR_17
CFAP70_TPR_C
TPR_9
CFAP70_mid_TPR
ANAPC3
ARM_TT21_C
TPR_6
CABIN1_N
TTC22_N
TPR_15
MSC6_N
BTAD
Retrotran_gag_2
Fis1_TPR_C
TolB_N
DUF8323
TPR_30
TPR_FimV
HAT_Syf1_M
FlbT
TPR_20
Motif
Other DBs
NCBI-GeneID:
146424421
NCBI-ProteinID:
XP_084898236
LinkDB
All DBs
Position
Z:complement(15168513..15220771)
Genome browser
AA seq
1572 aa
AA seq
DB search
MIHPLYLAATMSNKEVKAALKSARDAIKNKEYKEALKHCKAVLKQEKNNYNAWVFIGLAA
AELEQPDQAKGAYKKAIELEPNQLLAWQGLANLYEKPNQIDVKGDLADVYQKLLELYESG
DKQKWCDVCNKLVELYHQEKKYLEVAETWQKLIRRKQEEGAEKAELHQLWKKLIQLLKDS
TRNQDNKTGQLLLTAFEHALDSADAVPGEDHQNLYKDFIQCLSKFPHEVARLEKACHDMM
ALYPNMSYPLEVLCLHFVNSGILSEKALQCFSRLLEMDTSSGPGIIGFGIKCLKEKKYKE
AVKSLTEGLQKTNQCPAAWYYLAEAQMKIHEQRNAVLSCNQALEALGTPEGPNLQWKNLA
LQLKAETLIKIADADAAEEAIKALEQMVDASSDPVVSALRGQAYLNKGLMDQASKISQEL
LLSHPDLAEAHALEGFLHYSQKNYEQAEKSFLSAIERKAGTAEYHQYLGLTYWFMSDETK
KDKGKALTQFLKAAKLDSYLGSAFYYLGNYYRDIARDKSRARGCYKKAFELDEMDEESGA
AAVNLSVELGDMDTALSILNEVTEKARPGTAKWAWLHRGLYYLRIGQPSQAVADLQAALR
ADPKDSNCWESLGEAYLNRGSYSTALKSFRKASELNPGLVYSVYRAAALEQILGKYENAI
ATYQQILKKTENYVPALKGLGECYLMLARSALDNYFDRKAVDYIEQALAYFTRAVKHRPD
VSCLWKLLGDTCTSVHVISPTKVNVQVLGSLLGENTTKQMLKKNELLILGGRCYGRALKL
MPLPSIWCDLGINYYRQAEHLTAVGTDMNEISELLEKSLQCLKKAVRLDSKNHLYWNALG
VVASCSAIGNYALAQHSFIKSVQAEQINVVAWTNLGVLYLVTGNIEQAHEAFKIAQSLEP
SYLLCWIGQALIAETIGSYDTMDLFRHTTELSMHTEGAKGYAHWVCSTLQDKANRNTELY
LYNIVQMNAVPAAQVVLSKYTERNPDDASAFTMFGFLNEHLHLKRQAAYAYERAASLLKN
SEDTEKYKTAMQNYGRSLCALGLCDEAIEVYTSIPLTEFDGIVGLALAYFKKGLLEESIK
AYEKALSVAESEKDKAHILTALAIVEYKRNKVDSAKTLLFKCSLKEPSTESLKALCTLGL
VKQDATLATAALKELLKHEKVDDGIYERCLIASAVYALQGRNEAIQREVSKAIHSYPDNP
ALWALLSQLVPLYASKKPKGGAVAGSVAHTLDVNHGKEALLNIAVNQLVAGCHMLEDEKN
NPLKNIQKAIHVCPDNPAAWAVLMAACHAENTVVCLNNTQPKRTGLEMTLVSTVSAKTAE
SNFPHNYVHTLEDWCLCQAITSLEETGKLSEAEALCNKGLKSCPEHPALFLLLRQVQCKQ
LLQSHKELPDNILEELRKTVMTSSSSVAAWQWLAKVYQSQRMMTGAEMCYRKSLQLASQQ
GSWNGKLSSLLRLAMLALEISMANVSNEHWPSLVQEATTEALKLSPCPLAALLQALLQYN
RKMGARETRRMLERVIYQPGNPETVVSVARWYLLQHLYAKDDYELIDVLIQNAKANGDVR
TLELNEKLSASA
NT seq
4719 nt
NT seq
+upstream
nt +downstream
nt
atgatacaccctttgtatttggcagccacaatgtcaaataaggaggtgaaggcagcatta
aagagtgctagagacgcaataaagaataaagagtataaggaggccttaaaacattgcaag
gcagtcttgaagcaagagaaaaataactacaatgcttgggtgttcattggcctggcagct
gctgagttagagcagcctgatcaggccaaaggagcatataagaaggctattgaacttgaa
ccaaaccagttactggcatggcagggattagcaaatttatatgagaaacccaaccaaatt
gatgtcaaaggagacttagcagatgtttaccaaaaactcttggaactctatgaaagtggt
gacaagcagaaatggtgtgatgtatgtaacaagcttgtggaactatatcatcaagaaaag
aaatatttagaggtggctgaaacttggcagaagctaatacggaggaagcaggaggaagga
gcagaaaaggcagagcttcatcagctctggaagaagttgatccagttactgaaagacagt
acgaggaaccaggataataagactgggcagttgcttttgactgcatttgaacatgcactg
gactctgctgacgctgttcctggtgaagaccaccaaaacctttacaaagattttatacaa
tgcttgtcaaaatttcctcatgaagtagctaggttggaaaaagcctgtcatgatatgatg
gctttgtaccctaatatgagttatcctttggaagtactttgcttgcactttgtgaattca
ggtattttatcggaaaaggccctgcagtgtttctctaggcttttggagatggatacaagt
agtggtccgggcatcattggttttggtataaaatgcctcaaagaaaagaagtacaaggag
gctgttaagagtcttactgaaggtttgcagaagactaaccagtgtccagcagcatggtat
tatttagcagaggcacagatgaaaattcacgaacagaggaacgctgtcctgtcctgcaat
caagctcttgaggctcttggaactcctgagggtcctaatcttcagtggaagaaccttgcc
cttcagttgaaagcagagactttgattaaaatagctgatgctgatgctgcagaagaagcc
attaaagcacttgagcagatggtagatgcaagcagtgatccagtggtttcagctctcagg
ggtcaggcttatctaaacaaaggtttaatggatcaagcttcaaagatttcacaagagctc
ctgttgtcccaccctgatctggctgaggcccatgctctagagggtttcctccattattcc
caaaagaactatgaacaggcagaaaaaagttttctaagtgctattgaacgaaaggctgga
actgcagagtatcatcagtacttggggctcacatactggttcatgagtgatgagacaaaa
aaagacaaaggaaaagcactcactcagttcttgaaggctgcaaaattggacagctacttg
ggaagtgccttttattatctaggtaactactacagagacattgccagagacaaaagtaga
gctcgtggttgctataaaaaggcttttgaactggatgagatggatgaagaatctggagca
gcagctgtaaacttaagtgtggaacttggagacatggacactgcactgtcaatcctgaac
gaagtaactgaaaaagcaagacctggtacagcaaaatgggcctggcttcatcgcggactt
tattacctgagaattggtcagccgtcacaagcagtggctgatttgcaggcagctctgagg
gctgatccaaaggattccaactgctgggagtctttaggagaggcttatttgaacagaggt
agctactcaacagctctgaaatccttcaggaaagcaagtgagctgaacccaggactcgtg
tacagcgtttacagagctgcagcacttgagcagattctaggcaaatatgaaaatgctata
gctacctatcaacaaattttaaagaagacggaaaactatgtgcctgcactgaaaggactt
ggtgagtgttatctcatgctggcaagatcagcccttgataactatttcgataggaaggct
gtggattacatagagcaggctcttgcatattttacaagggcagtaaagcaccgtcctgat
gtatcttgcctctggaaactgttaggagatacctgtactagtgtgcatgttatttcacca
accaaagtgaatgttcaagtactaggatcccttctgggtgaaaatacaaccaagcagatg
ctgaagaaaaatgagctgctcatactgggaggaaggtgttatggcagagctttaaaactg
atgcctttgcctagcatatggtgtgatcttggaataaattattatcgacaagcagagcac
ctcacagcagtgggcactgacatgaatgagatcagtgaactgctagagaagtctttgcag
tgtctcaaaaaagccgtgagacttgacagcaaaaatcatctttattggaatgcgcttggt
gtagttgcttcttgcagtgctattgggaattatgctcttgctcaacattcgttcatcaaa
tctgttcaagctgagcaaattaatgttgttgcctggaccaacttgggagttttgtatctt
gtaactggaaatattgagcaagctcatgaagccttcaagatagcccagtctctggagcct
tcttacttgttgtgttggattggacaggctcttattgcagaaaccataggcagctatgat
actatggatctcttcaggcacacgactgaactcagtatgcatactgagggagcaaaaggc
tatgcccactgggtatgttcaacactgcaggataaagccaacagaaacactgaactgtat
ctgtacaacattgttcaaatgaatgctgtaccagcagcccaagtggtcttgagcaaatat
acagaaagaaatccagatgatgcatctgctttcacaatgtttggttttttgaatgagcat
ctgcatctaaaacggcaggcagcctatgcctatgagagggcagcttcactgctgaaaaac
tcagaggatactgagaaatacaaaacagcaatgcagaactatggcaggtcgttgtgtgct
cttggtctgtgtgatgaggccattgaagtttacacatcaatacccctaactgaatttgat
ggcattgtggggctggcattagcttacttcaagaaaggactcttagaagaaagtatcaaa
gcctatgagaaagccttgtctgttgctgagtctgaaaaagataaagcacatatcctgact
gccttggcaatagtggaatataaacggaacaaagtggattctgcaaagacactgctgttt
aaatgctcattaaaggaacctagtacggaaagtctgaaggctttgtgtacactaggattg
gtaaagcaggatgcaacacttgcaacagcagccctaaaagaattactgaagcatgaaaaa
gtggatgatgggatttatgagaggtgccttattgcatctgctgtttatgcattacaaggt
agaaatgaggcaatccagagggaagtctccaaagcaatacacagttaccctgataatcct
gccctttgggctcttctgtctcaactagttccactgtatgcatcaaaaaagccaaaagga
ggagctgtggcaggaagtgttgcacatacccttgatgtaaaccatggaaaggaagccctg
ctgaatattgcagttaatcagttggtagcaggatgtcacatgttagaagacgagaaaaac
aatcctctgaaaaatattcagaaggccatccatgtctgtccagataatcctgctgcttgg
gcagtgctaatggcagcctgtcatgctgaaaacactgttgtctgtctaaacaacacacaa
ccgaaacgaacaggtctggagatgacacttgtgtctacagtctcagccaaaactgcagaa
agtaacttcccacataattatgtccatactcttgaagactggtgtctgtgtcaagctatt
accagtctagaggagactggtaaactatcagaagctgaagctctttgtaacaagggttta
aaaagctgccctgaacacccggctctgtttttgcttttgagacaagttcagtgtaagcag
ctgttgcagtctcacaaagaacttccagacaacatcctggaggaacttcgcaagacagtc
atgactagttcatcctcagttgcagcctggcaatggctggcgaaagtctatcagtctcag
agaatgatgactggagcagaaatgtgttacagaaagagtctgcagctggcatcacagcag
ggcagctggaatgggaagttgtccagtctgctcaggctagctatgctcgcactggaaatc
agcatggctaatgtctcaaatgagcactggccatccttggttcaggaggcaacaactgaa
gctttgaaactttctccttgtcccctggcagctctgcttcaagccctgctacagtataat
cgcaaaatgggagcaagggagactcgccgaatgttggagagagtcatttatcaaccaggg
aatccagaaactgtagtgtcggtggcacgctggtaccttctgcaacatctgtatgccaaa
gatgattatgaattaattgatgtgcttatacaaaatgccaaagctaatggagatgttaga
actctggaactaaatgagaaattgtcagcaagtgcctag
DBGET
integrated database retrieval system
