Lichenostomus cassidix (helmeted honeyeater): 146425752
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Entry
146425752 CDS
T12101
Symbol
COL2A1
Name
(RefSeq) collagen alpha-1(II) chain
KO
K19719
collagen type II alpha
Organism
lcai Lichenostomus cassidix (helmeted honeyeater)
Pathway
lcai04510
Focal adhesion
lcai04512
ECM-receptor interaction
lcai04518
Integrin signaling
Brite
KEGG Orthology (KO) [BR:
lcai00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
146425752 (COL2A1)
04518 Integrin signaling
146425752 (COL2A1)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
146425752 (COL2A1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
lcai00536
]
146425752 (COL2A1)
Glycosaminoglycan binding proteins [BR:
lcai00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
146425752 (COL2A1)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
COLFI
VWC
VWC2L_2nd
Motif
Other DBs
NCBI-GeneID:
146425752
NCBI-ProteinID:
XP_084897221
LinkDB
All DBs
Position
29:307557..325163
Genome browser
AA seq
1505 aa
AA seq
DB search
MAEGRSDPAGQRRLPAAPCPLPPAAPRPPLLLLLLLLLAAAAAAQDRDLPEAGSCLQDGQ
RYSDKDVWKPEPCRICVCDTGTVLCDDIICEELRDCPSPEIPFGECCPICPAEPGGQPGP
KGQKGEPGDIKDVVGPRGPPGPQGPAGEQGQRGDRGEKGEKGAPGPRGRDGEPGTPGNPG
PPGPPGPPGPPGLGGNFAAQMAGGFDEKAGGAQMGVMQGPMGPMGPRGPPGPSGSPGPQG
FQGNPGEPGEPGAAGPMGPRGPPGPPGKPGDDGETGKPGKSGERGPPGPQGARGFPGTPG
LPGVKGHRGYPGLDGAKGEAGAPGAKGESGSPGENGSPGPMGPRGLPGERGRPGPSGAAG
ARGNDGLPGPAGPPGPVGPAGAPGFPGAPGSKGEAGPTGARGPEGAQGPRGESGTPGSPG
PAGAPGNPGTDGIPGAKGSAGAPGIAGAPGFPGPRGPPGPQGATGPLGPKGQTGEPGIAG
FKGEQGPKGETGPAGPQGAPGPAGEEGKRGARGEPGAAGPLGPPGERGAPGNRGFPGQDG
LAGPKGAPGERGPAGLAGPKGATGDPGRPGEPGLPGARGLTGRPGDAGPQGKVGPTGAPG
EDGRPGPPGPQGARGQPGVMGFPGPKGANGEPGKAGEKGLPGAPGLRGLPGKDGETGAAG
PPGPAGPAGERGEQGAPGPSGFQGLPGPPGPPGESGKPGDQGVPGEAGAPGLVGPRGERG
FPGERGSPGAQGLQGPRGLPGTPGTDGPKGATGPAGPNGAQGPPGLQGMPGERGAAGIAG
PKGDRGDVGEKGPEGAPGKDGARGLTGPIGPPGPAGPNGEKGESGPPGPSGAAGARGAPG
ERGEPGAPGPAGFAGPPGADGQPGSKGEQGEPGQKGDAGAPGPQGPSGAPGPQGPTGVTG
PKGARGAQGPPGATGFPGAAGRVGPPGPNGNPGPPGPPGSAGKDGPKGARGDAGPPGRAG
DPGLQGPAGPPGEKGEPGEDGPAGPDGPPGPQGLAGQRGIVGLPGQRGERGFPGLPGPSG
EPGKQGAPGSAGDRGPPGPVGPPGLTGPAGEPGREGNPGADGPPGRDGAAGVKGDRGETG
PVGAPGAPGAPGAPGPVGPTGKQGDRGETGAQGPMGPSGPAGARGMPGPQGPRGDKGETG
EAGERGLKGHRGFTGLQGLPGPPGPSGDQGAAGPAGPSGPRGPPGPVGPSGKDGSNGMPG
PIGPPGPRGRSGEPGPAGPPGNPGPPGPPGPPGTGIDMSAFAGLGQPEKGPDPIRYMRAD
EAAPGLRPHDAEVDATLKALNSRIESIRSPEGSRKNPARTCRDIKLCHPEWKSGDYWIDP
NQGCTLDAIKVFCNMDTGETCVYPSPGSIPRKNWWSSKAKEKKHVWFAETINGGFHFSYG
AEELPPNTANIQMTFLRLLSTEGSQNVTYHCRNSVAYLEQATGSLRKALLLQGSNDVEIR
AEGNSRFTYSVLEDGCTKHTGKWGKTVIEYRSQKTSRLPIVDIAPMDIGGPEQEFGVDLG
PVCFL
NT seq
4518 nt
NT seq
+upstream
nt +downstream
nt
atggccgaaggtcgctcggaccccgccggacagcgccggctgcccgctgccccctgcccg
ctgccccccgccgccccccggccgccgctcctgctcctcctcctcctcctcctcgccgcc
gccgccgccgcgcaggacagagacctccccgaggctggcagctgcctgcaggacgggcag
cgctacagcgacaaggacgtgtggaagcccgagccgtgccggatctgcgtgtgcgacacg
gggacagtgctgtgcgacgacatcatctgcgaggagctgcgcgactgcccgagccccgag
atccccttcggagagtgctgccccatctgccccgccgagcccggcgggcagcccggcccc
aagggacaaaaaggcgaaccaggcgacatcaaagatgtcgtaggaccccgaggacctcca
gggccgcagggccccgcaggtgagcagggacagcgaggggaccgcggcgagaagggcgag
aagggcgcccccggcccgcggggcagggatggagagccagggacccccgggaacccagga
ccccccggaccccccggaccgccgggaccccccggcctgggggggaacttcgcggcgcag
atggcaggagggttcgacgagaaggcaggaggagctcagatgggagtcatgcagggaccc
atgggccccatgggaccccgcggccccccaggcccctccggctctcccggtccccaagga
ttccaaggcaaccccggcgagcctggcgagcctggagcagctggtccgatgggtccccgg
ggacctccaggacctcccggcaaacctggtgacgacggtgagacaggcaaacctgggaaa
tcgggcgagagaggtccccccgggccccagggcgctcgcggcttccccgggaccccaggg
ctgcctggagtcaaaggccaccggggctatcccggactggacggagccaagggagaggca
ggagctcctggagccaagggcgagtcaggctccccgggcgagaatggctcccctgggccc
atgggtccccgcgggctgcccggagagcgaggaaggcctggaccctcgggcgcggcgggc
gccagaggcaatgatggcctccccggcccggccggaccgccgggtcctgtcggccccgcc
ggagctccaggattccccggcgcgcctggctccaagggtgaagcaggtcccactggcgcg
aggggacccgagggtgcccagggaccccgaggagagtcagggacccccggctcgcccggc
ccggccggagcccccgggaaccccgggactgatggcatccccggagcgaagggatcggcg
ggcgcccctggcatcgcgggagctccaggattcccaggaccccgagggcctccaggaccc
cagggagccaccgggccgctgggaccgaagggacagacgggcgagcctggcatcgcagga
ttcaagggcgagcaaggacccaaaggagagacgggccccgcaggtccccagggtgctcct
ggccctgctggggaggaagggaagagaggagcccgaggagagcccggagctgccggacct
ttggggccacctggagagaggggtgctcctggcaatcgtggcttccccgggcaggacggg
ctggcagggcccaagggtgccccaggtgaacgcggccccgcaggcctggctggtcccaaa
ggagccactggagaccctgggagacctggagagcctggattgcctggggccaggggtctc
accggccgccctggagatgctggaccccaaggcaaagttggccctacaggagcccccggc
gaggatggacgcccaggacctcctggccctcagggagctcggggtcagcctggcgttatg
gggttccctggtcccaaaggggccaacggtgagcctggcaaagctggggaaaaaggactt
cccggagcaccagggctgaggggacttcccggcaaggatggagagacaggagctgctgga
ccccctggacctgctggccctgcgggggagaggggagagcaaggagctcccgggccgtcc
ggcttccagggtctgccaggcccccccggcccccccggcgagagcggcaaacccggagat
cagggagttcctggagaagctggagcccccgggctggtggggcccaggggcgagcgtggc
ttccccggcgagcgcggctctcccggggctcagggtctgcagggaccccgcggcctcccc
gggacccccggcacggacggacccaagggcgccaccggccccgctggtcccaatggcgcg
cagggcccgccggggctgcaggggatgcccggggagcgcggagccgccgggatcgccgga
cccaagggcgacaggggtgacgtcggagagaaaggacccgagggagctcccggcaaggac
ggagcgcgcggtctcacaggtcccatcggcccccccggccccgctggccccaacggcgag
aagggcgagtcaggccctcccggcccgtccggagccgccggtgcccgcggtgcccccggt
gagcgcggagagcccggagctcctggccctgccggattcgctggacccccgggcgccgat
ggccagccgggctccaagggcgagcagggagagcctggacagaaaggtgacgctggagct
cctggaccgcagggaccctcgggggcacctggaccacagggtcccaccggagtcactggc
cccaagggagcccgaggggctcagggcccccctggagccacaggattccctggagccgcc
ggacgggttggaccccctggccccaatggtaacccaggcccccccgggccccccggctcg
gcgggcaaggatggccccaaaggcgctcggggcgacgcaggaccccccggccgggcagga
gaccccgggctgcagggacccgcgggacccccgggggagaagggagagcccggcgaggat
ggacctgcgggcccggatggcccccctggtccccaggggctggcaggacagcgcggcatt
gtggggctgccgggacagcgcggagagagaggattcccggggctgccgggaccctcggga
gaacctggcaaacagggagcgcccggctcggctggagatcggggtcctcctgggcctgtg
ggacccccggggctgacaggacctgccggagaaccaggccgggagggaaatcctggcgct
gatggaccgccgggcagggatggggcagccggagtgaagggcgatcgcggtgagacagga
ccggtgggagctcccggtgctcccggcgcccccggagctcctgggcctgtgggacccacg
ggaaaacagggagacaggggagagacgggcgcccaaggccccatgggtccctccggtcct
gctggcgctcgggggatgccgggaccccaaggaccccgcggggacaaaggagagacagga
gaggctggagagcgtggcctgaagggacaccgcggcttcaccgggctgcaggggctgcct
ggaccccccggtccctctggagaccaaggcgctgcaggccccgcaggaccctccggcccc
aggggtccccccggccccgttggcccctccggcaaggacggctccaatggcatgcctgga
cccatcggccctcccggaccccgcgggaggagcggcgagcccggcccggcgggtcccccc
ggtaaccccggcccccccggcccccccgggccccccggcaccggcatcgacatgtctgcg
ttcgcggggctggggcagcccgagaagggccctgaccccatccgctacatgcgcgccgac
gaggctgcgccggggctgcggccgcacgacgccgaggtggacgccacgctcaaggccctc
aacagccgcatcgagagcatccgcagccccgagggatcccgcaagaaccctgccaggacc
tgccgcgacatcaaactctgccaccccgagtggaagagcggcgactactggattgacccc
aaccagggctgcaccctggacgccatcaaggtcttctgcaatatggacactggagagacg
tgtgtgtatcccagccccggcagcatccccaggaagaactggtggagcagcaaagccaag
gagaagaagcacgtctggttcgctgagaccatcaatggtggcttccatttcagctacggc
gctgaggagctgccgcccaacacggccaacatccagatgaccttcctgcggctgctgtcc
accgagggctcgcagaacgtcacctaccactgccgcaacagcgtggcttacctggagcag
gcgacgggcagcctgcgcaaggcgctgctcctgcagggctccaacgacgtggagatccgc
gccgagggcaacagccgcttcacctacagcgtgctggaggacggctgcacgaaacacacc
gggaagtggggcaagaccgtcatcgagtatcgctcgcagaagacctcccgcctgcccatc
gtggacatcgcgcctatggacattgggggccccgagcaggagtttggggtcgacctcggc
ccagtctgcttcttgtaa
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