Lichenostomus cassidix (helmeted honeyeater): 146426800
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Entry
146426800 CDS
T12101
Symbol
DDX42
Name
(RefSeq) ATP-dependent RNA helicase DDX42 isoform X1
KO
K12835
ATP-dependent RNA helicase DDX42 [EC:
5.6.2.7
]
Organism
lcai
Lichenostomus cassidix (helmeted honeyeater)
Pathway
lcai03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
lcai00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
146426800 (DDX42)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
lcai03041
]
146426800 (DDX42)
Enzymes [BR:
lcai01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
146426800 (DDX42)
Spliceosome [BR:
lcai03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
146426800 (DDX42)
Complex B
146426800 (DDX42)
Complex C
U2 SnRNP specific factors
146426800 (DDX42)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
P-loop_SecA
ERCC3_RAD25_C
DUF460
Motif
Other DBs
NCBI-GeneID:
146426800
NCBI-ProteinID:
XP_084896026
LinkDB
All DBs
Position
27:complement(5842520..5858232)
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AA seq
982 aa
AA seq
DB search
MNWNKGGPGTKRGFGFGGFAITPGKKEEPKLSQQSHSAFGTAGSSAAFAKSGPPQLPSFY
KIGSKRANFDEENAYFEDEEEDSSNVELPYIPAENSPTRQQFHSKSADSDSDDDPLEAFM
AEVEDQAARDMKRLEDKDKEKKNVKGIRDDIEEEDDQEAYFRYMAENPTAGVVQEEEEDN
LEYDSDGNPIAPSKKIIDPLPPIDHSEIEYPPFEKNFYDEHEEITSLTPQQVVELRHKLN
LRVSGAAPPRPGSSFAHFGFDEQLMHQIRKSEYTQPTPIQCQGVPVALSGRDMIGIAKTG
SGKTAAFIWPMLIHIMDQKELEPGDGPIAVIVCPTRELCQQIHSECKRFGKAYNLRSVAV
YGGGSMWEQAKALQEGAEIVVCTPGRLIDHVKKKATNLQRVTYLVFDEADRMFDMGFEYQ
VRSIASHVRPDRQTLLFSATFRKKIEKLARDILIDPIRVVQGDIGEANEDVTQIVEIFPS
GPSKWNWLTRRLVEFTSSGSVLLFVTKKANAEELANNLKQEDHNLGLLHGDMDQSERNKV
ISEFKKKGIPILVATDVAARGLDIPSIKTVINYDVARDIDTHTHRIGRTGRAGEKGVAYT
LLTPKDSNFAGDLVRNLEGANQHVSKELLDLAMQNPWFRKSRFKGGKGKKLNIGGGGLGY
RERPGLGSENSERGNNNSVMSNYEAYKPSTGAMGDRLTAMKAAFQSQYKSHFVAASLNNQ
KAGSSAAGASGWTSAGSLNSVPTSSAQQNATNPDSHNPIAATAAAKGVPGFTSSGSLSSV
PTFPSAGAQSFNSTNANSREGGASGGGGMVRERYNDNRNSRHGEAPRRGEGGGRAEGGGR
AEGGGRAEGSGRYNDAQRYNDAQRYNDAQRYNNAQRYNDVQRYNDVQRYNDVQRHGEGSG
RHSDPSRHGDGRHGDLHRHGEGRHFTDFPGGNRNNGDSRNSTEGRNSESRNGENRKDASS
RDKTDGFAVPEPPKRKKSRWDS
NT seq
2949 nt
NT seq
+upstream
nt +downstream
nt
atgaattggaataaaggtggacctggtactaagagaggctttgggtttggtggatttgcc
ataacccctgggaagaaagaggagcctaagctgtctcagcagtcccacagtgcttttggc
acagctggttcctcagcagcctttgcgaaatcgggacctcctcagctgccttccttctac
aaaattggctcaaagcgagcaaattttgatgaggagaatgcatactttgaggatgaagag
gaagattccagcaacgtggaattgccctacattcctgcagagaattcccccactcggcag
cagttccattctaaatctgcagactctgacagtgatgatgatcctctggaggcattcatg
gctgaagtggaggatcaagctgctcgagatatgaagagacttgaagataaagacaaagaa
aagaagaacgttaagggtattcgagatgacattgaagaggaagatgaccaagaagcatat
ttccgctacatggctgagaaccccacagccggtgtggtgcaagaggaggaagaggataac
ctggagtatgatagtgatgggaatccgattgcaccgtccaaaaaaatcattgatcctctt
ccacctattgaccattcagagattgaatacccaccatttgaaaaaaatttctatgatgag
catgaggagatcaccagcctgaccccgcagcaagtagtggagttacggcataagctgaat
ctccgggtctctggtgctgctcctccaaggcctggcagtagttttgctcattttgggttt
gatgagcaacttatgcatcagattaggaaatctgagtatacccaacccactccaatacaa
tgtcagggtgttccagtggcactaagtggcagagacatgattgggatagctaagactgga
agtgggaaaacagctgccttcatctggccgatgctgatccacatcatggatcagaaggag
cttgaaccaggcgatggtcccattgcagtgattgtctgcccaaccagggagctctgccag
cagatccactcggagtgcaagcgctttggcaaggcctacaacctgcgctccgtggctgtg
tatggaggagggagcatgtgggagcaagccaaggccctgcaggagggggcagagatcgtg
gtctgcactccaggtcgtttgattgatcatgtgaaaaagaaagctacaaatcttcagaga
gtcacttaccttgtgtttgatgaagctgacaggatgtttgatatggggtttgagtatcag
gtcagatcaattgcaagccacgtacgtcctgacagacagaccctcttgttcagtgccaca
ttccgtaagaagattgagaaattggcccgggatattctgatcgacccaatcagggttgtg
caaggagacattggagaggcaaatgaagatgtcactcagattgtggagattttcccctct
gggcccagcaagtggaactggctgacgcggcgcctcgtggagttcacgtcctctgggagt
gtcctcctctttgtcaccaagaaagccaacgcagaggaattggccaataacctcaagcag
gaggatcataacctggggctgcttcatggggacatggaccagagcgagaggaataaagtc
atttcagaatttaagaaaaaggggatccccatactggtagctactgatgtggcagctcga
gggttggatatcccttccatcaagactgtcatcaactacgacgtggctcgagacatagac
actcacacccaccgcatcggccgcactggccgcgcaggagagaagggagttgcctacact
ctgctgacccccaaggacagcaacttcgctggtgacctggtcagaaacctggagggtgcc
aaccaacatgtctccaaagagctgctggatctggcaatgcagaatccgtggttccggaaa
tcccgttttaaaggagggaaaggcaagaagctgaatattggtggtggtggcttgggatac
cgcgaacgccccgggctgggctcagaaaattctgagcgtggaaacaacaacagtgtgatg
agcaactatgaggcctacaagccctccacgggggccatgggggacaggctgacagcaatg
aaagcagctttccagtcccagtacaagagtcactttgttgctgcaagtttaaataaccaa
aaggctgggagctctgctgctggtgccagcggctggaccagcgctgggagcctgaactct
gtcccgacgagttcagcacagcaaaacgccaccaatcctgacagccacaatcccatcgca
gccactgcggcagcaaagggtgtcccaggcttcaccagcagcggcagtttgagcagcgtt
cccaccttcccgagcgccggagcacagagcttcaacagcaccaatgccaacagtcgagag
ggtggtgccagtggtggtggtggcatggtcagagaacggtacaacgacaaccggaacagt
cgccatggtgaggccccgcggcgtggggagggaggtggccgtgccgagggaggtggccgt
gccgagggaggtggccgtgcagagggcagtggccgctacaacgatgcccagcgttacaac
gatgcccagcgttacaacgatgcccagcgttacaacaatgcccagcgctacaacgatgtc
caacgttacaatgatgtccaacgctacaatgacgtccaacgccacggtgaaggcagtggc
cgccacagtgacccttcccggcacggcgatggccgccacggtgacctccatcgccacggc
gagggtcggcacttcaccgacttcccaggcggcaaccgcaacaatggtgacagcaggaac
agcaccgaagggaggaacagtgagagcaggaatggagagaacaggaaggatgccagcagc
cgagacaagacagatggttttgctgtcccagagcccccaaaacggaagaagagccgatgg
gacagttaa
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