Lichenostomus cassidix (helmeted honeyeater): 146428057
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Entry
146428057 CDS
T12101
Symbol
TIA1
Name
(RefSeq) cytotoxic granule associated RNA binding protein TIA1 isoform X1
KO
K13201
nucleolysin TIA-1/TIAR
Organism
lcai
Lichenostomus cassidix (helmeted honeyeater)
Brite
KEGG Orthology (KO) [BR:
lcai00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lcai03019
]
146428057 (TIA1)
03041 Spliceosome [BR:
lcai03041
]
146428057 (TIA1)
Messenger RNA biogenesis [BR:
lcai03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Stress granule specific factors
146428057 (TIA1)
Spliceosome [BR:
lcai03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA binding proteins (RBPs)
146428057 (TIA1)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RRM_1
RRM_occluded
RRM_7
RRM_Nup35
Calcipressin
RRM_3
XOO_2897-deam
Motif
Other DBs
NCBI-GeneID:
146428057
NCBI-ProteinID:
XP_084936877
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All DBs
Position
22:3442282..3460211
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AA seq
419 aa
AA seq
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MHTWAVFPSFSQADVVTWSIFPSFGSGKSDSNSQSSFHKPCSPVQQERHERKGIIPRYVG
NLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDPYCFVEFYEHRHAAAALAAMNGRKIM
GKEVKVNWATTPSSQKKDTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMAT
GKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKPPAPKSTYETNTKQLSYD
EVVTQSSPSNCTVYCGGVTSGLSEQLMRQTFSPFGQIMEIRVFPDKGYSFVRFNSHESAA
HAIVSVNGTTIEGHVVKCYWGKETPDMVSPVQQSQLSYPPPYGQWGQWYGGAQLGQYVPN
GWQVPTYGVYGQAWNQQGFGQSQSSAPWISPGYGVQAAQGQNGAVVPPQPGFRVGFETP
NT seq
1260 nt
NT seq
+upstream
nt +downstream
nt
atgcacacctgggctgtgtttccctccttttcccaggcagatgttgttacctggagtatt
tttccctcgtttggatcagggaaatcagattccaattcccaatccagcttccataagcct
tgttctccagtgcagcaggaaagacacgagagaaagggaatcattccaaggtacgtgggg
aacctctccagggacgtgaccgaggctctgatcctccagctgttcagccagatcggaccc
tgcaagaactgcaagatgatcatggatacagctgggaatgatccctactgcttcgtggag
ttctacgagcatcggcacgcggccgccgccctggctgccatgaacggcaggaagataatg
ggtaaggaggtcaaagtgaactgggccaccacccccagcagccagaagaaagacaccagc
aaccatttccacgtctttgtcggtgacctgagccctgaaatcaccactgaggacatcaag
gcagccttcgctcccttcggcaggatctcggatgctcgggtggtcaaggacatggccaca
ggcaaatccaagggctatggcttcgtctccttcttcaataaatgggatgcagagaatgcc
atccagcagatggggggacagtggctcggcgggcggcagatcaggaccaactgggccacg
aggaaacctccagctcccaagagcacctatgagacaaacaccaaacagctgtcctacgat
gaggtggtcactcagtccagccccagcaactgcacagtgtactgcgggggagtcacctcg
ggcctctcagagcagctgatgcgccagaccttctcccccttcgggcagatcatggagatc
cgagtgttcccggataaaggatattccttcgtcaggttcaattcccacgagagcgcagcc
cacgccatcgtctccgtcaacggcaccaccatcgagggccacgtggtcaagtgctactgg
ggcaaggagacacccgacatggtcagccctgtccagcagagccagctgagctaccctccc
ccctacgggcagtggggccagtggtacggcggtgcccagctgggccagtatgtgcccaac
ggctggcaggtgccaacctacggcgtctacggccaggcctggaaccagcagggattcggg
cagagccagtcctcagccccgtggatcagccccggctacggcgtgcaggcggcgcagggg
cagaacggcgccgtggttcctccccagcccggcttccgcgtgggcttcgagaccccctga
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