KEGG   Lichenostomus cassidix (helmeted honeyeater): 146433152
Entry
146433152         CDS       T12101                                 
Symbol
RFC4
Name
(RefSeq) replication factor C subunit 4
  KO
K10755  replication factor C subunit 2/4
Organism
lcai  Lichenostomus cassidix (helmeted honeyeater)
Pathway
lcai03030  DNA replication
lcai03410  Base excision repair
lcai03420  Nucleotide excision repair
lcai03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:lcai00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    146433152 (RFC4)
   03410 Base excision repair
    146433152 (RFC4)
   03420 Nucleotide excision repair
    146433152 (RFC4)
   03430 Mismatch repair
    146433152 (RFC4)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:lcai03032]
    146433152 (RFC4)
   03036 Chromosome and associated proteins [BR:lcai03036]
    146433152 (RFC4)
   03400 DNA repair and recombination proteins [BR:lcai03400]
    146433152 (RFC4)
DNA replication proteins [BR:lcai03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   RFC (replication factor C)
    146433152 (RFC4)
  DNA Replication Termination Factors
   ELG1-RFC complex
    146433152 (RFC4)
Chromosome and associated proteins [BR:lcai03036]
 Eukaryotic type
  Sister chromatid cohesion proteins
   CTF18-RFC complex
    146433152 (RFC4)
DNA repair and recombination proteins [BR:lcai03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    RFC (replication factor C)
     146433152 (RFC4)
  Check point factors
   HRAD17(Rad24)-RFC complex
    146433152 (RFC4)
SSDB
Motif
Pfam: Rep_fac_C AAA DNA_pol3_delta2 RCF1-5-like_lid AAA_assoc_2 AAA_lid_RFC1 Rad17 AAA_16 AAA_11 AAA_22 AAA_30 SLFN-g3_helicase DUF815 Mg_chelatase AAA_14 AAA_24 RuvB_N AAA_19 AAA_5 TIP49_C AAA_23 AAA_28 DNAX_ATPase_lid ResIII AAA_7 ParB
Other DBs
NCBI-GeneID: 146433152
NCBI-ProteinID: XP_084925270
LinkDB
Position
9:7929393..7941456
AA seq 362 aa
MQAFLKGPASISTKPVAAKEKSAAGSSGESKRTKPIPWVEKYRPKNVDEVAFQDEVVAVL
KKSLEGADLPNLLFYGPPGTGKTSTILAAARELFGPDLFRQRVLELNASDERGIQVIREK
VKAFAQLTASGSRSDGKMCPPFKIVILDEADSMTSAAQAALRRTMEKESKTTRFCLICNY
ISRIIEPLTSRCSKFRFKPLSDSIQQQRLLDVSEKEHVKISNEAVSYLVKVSEGDLRKAI
TFLQSATRLMGGKEITEKIITEIAGVIPKETIDELLLGCQSGSFEKLETLAKNLINEGFA
VAQLINQLHDTVVESEDYSDKQKSAIVEKLAEVDKCLADGADEFLQLMSLCALVMQQLTQ
NT
NT seq 1089 nt   +upstreamnt  +downstreamnt
atgcaggccttcctcaaaggcccggcctctatcagcaccaagcccgtcgctgccaaggaa
aagagcgcggccgggagcagcggggagagcaagaggaccaaacccattccctgggtggag
aaataccgccccaaaaacgtggatgaagttgccttccaggatgaagttgtagctgtgctg
aagaagtccctggaaggtgctgatcttcccaatctgttgttctatggcccacctggaact
ggaaagacttccactattttagcagctgctcgagaactgtttgggcctgatttattccgg
caaagagtccttgagttaaatgcttctgatgagcgtgggatacaagtgattcgggaaaaa
gtgaaggcttttgctcagctaactgcatctggaagccgttcagatggtaaaatgtgtcct
ccttttaaaattgtaatcctggatgaggcagattctatgacttcagcagcccaggcagcc
ttaagacgcacaatggaaaaagaatctaaaacaacacgtttctgtctgatttgtaactac
atcagcagaataattgaacctttaacatctcgatgctccaaattccgcttcaagcctttg
tcagacagtatccaacagcagaggctgttggatgtttctgagaaggaacatgtgaaaatc
agtaatgaggcagtatcataccttgtgaaagtgtcagaaggggacttaagaaaagcaatt
acttttcttcagagtgccactcgcctaatgggtgggaaggagatcacagagaagataatc
actgaaattgctggggtcatccctaaagaaacaattgatgaactgctattgggctgccag
agtggttcctttgagaaacttgaaacactggcaaagaatctcatcaatgaggggtttgct
gttgctcagcttataaaccagctgcatgacacggtcgtggagagcgaagattacagcgac
aagcagaaatctgccatagttgagaaacttgcagaagtggacaaatgcctggcagatggt
gctgatgaattcttgcagctgatgagtctctgtgcccttgtgatgcagcagctcacacag
aacacctga

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