Lichenostomus cassidix (helmeted honeyeater): 146435849
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Entry
146435849 CDS
T12101
Symbol
HIF1A
Name
(RefSeq) hypoxia-inducible factor 1-alpha isoform X1
KO
K08268
hypoxia-inducible factor 1 alpha
Organism
lcai Lichenostomus cassidix (helmeted honeyeater)
Pathway
lcai04137
Mitophagy - animal
lcai04140
Autophagy - animal
lcai04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
lcai00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
146435849 (HIF1A)
04137 Mitophagy - animal
146435849 (HIF1A)
04148 Efferocytosis
146435849 (HIF1A)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
lcai03000
]
146435849 (HIF1A)
Transcription factors [BR:
lcai03000
]
Eukaryotic type
Basic helix-loop-helix (bHLH)
Factors with PAS domain
146435849 (HIF1A)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
bHLH_HIF1A
PAS_3
PAS_11
HIF-1a_CTAD
PAS
HIF-1
PAS_9
PAS_4
HLH
Motif
Other DBs
NCBI-GeneID:
146435849
NCBI-ProteinID:
XP_084917247
LinkDB
All DBs
Position
5:5732912..5767227
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AA seq
810 aa
AA seq
DB search
MDSPGGVTDKKRISSERRKEKSRDAARCRRSKESEVFYELAHQLPLPHTVSAHLDKASIM
RLTISYLRMRKLLDAGELETEAKMEKELNCFYLKALDGFVMVLSEDGDMIYMSENVNKCM
GLTQFELTGHSVFDFTHPCDHEELREMLTHRNGPVKKGKEQNTERSFFLRMKCTLTSRGR
TVNIKSATWKVLHCTGHIRVYDTCGNQTHCGYKKPPMTCLVLICEPIPHPSNIEVPLDSK
TFLSRHSLDMKFSYCDERITELMGYEPEELLGRSIYEYYHALDSDHLTKTHHDMFTKGQV
TTGQYRMLAKQGGYVWVETQATVIYNTKNSQPQCIVCVNYVLSGIVQKDLIFSLGQTECM
LKPVESPDMKMTKIFNKDDLDDTNSLFEKLKQEPDALTVLAPAAGDTIISLDFSSNESDE
QQCDEVPLYNDVMLPSSSEKLQNINMAMSPLPASETTKPLRSNADPALNREVVSKLEPNT
EPLELSFTMPQVQEQPTSPSDASTSQSSPEPSSPNDYCFDVDNDMASEFKLELVEKLFAI
DTEAKNPFSTQETDLDLEMLAPYIPMDDDFQLRSFDQLSPLESSSSSSQSAATITIFQQS
QAAPSPAEEMKPAERADDVKTIIVPSSPVRGVAESSSAPASPYGGSRSRTASPIRAGKGT
VDQAEKPSPGAPSLLTVTLNKRSTALDEELNPKMLALHNAQRKRKMEHDGSLFQAVGIGS
LFQQTGDRGGNASLAWKRVKGCKTNGHSGVEQKTIILLSTDIASKLLGQSMDESGLPQLT
SYDCEVNAPIQGNRNLLQGEELLRALDQVN
NT seq
2433 nt
NT seq
+upstream
nt +downstream
nt
atggacagccccggcggcgtcaccgacaagaagaggattagctctgagcgcaggaaagag
aagtcgagagatgccgcgcggtgcaggaggagcaaggagtcggaggtgttctatgagttg
gctcaccagctgcccctgccccacactgtgagtgcacacctggacaaggcatccattatg
aggctgaccatcagctacctgcgcatgaggaagctgctggatgctggtgagctggagaca
gaagccaaaatggagaaggaactgaactgtttctacttgaaagctctggatggctttgtc
atggttctgtctgaagatggggacatgatttacatgtctgaaaatgtgaacaagtgtatg
gggctcactcagtttgagttgacggggcacagtgtatttgatttcactcatccatgtgac
catgaggagctgagagaaatgcttacacacagaaatggtcctgtgaaaaagggcaaagag
caaaacacggagcgcagcttttttctcagaatgaagtgtactctgactagcaggggaaga
acagtgaatataaagtctgctacatggaaggtgctgcactgcactggccacatccgtgtg
tacgacacgtgtgggaaccaaactcactgcggatacaaaaagcctcccatgacctgcctg
gtgttgatctgtgaacctattcctcacccatcaaacattgaggtccccctggacagtaaa
acgttcctcagtcgtcacagtcttgatatgaaattttcttattgtgatgaaagaattaca
gagttgatggggtacgagccagaggagctcctgggtcgctcaatctatgagtactatcac
gcactggattctgatcatctgaccaaaacacaccatgacatgttcacaaaagggcaggtg
acaacaggacagtacagaatgctggcgaaacaaggtggctatgtctgggttgaaactcaa
gcaactgttatatacaacactaagaattctcagccacagtgcatagtgtgtgtgaactat
gtgttgagtggaattgttcagaaggacttaattttttcccttggacaaactgagtgtatg
ctgaaaccagtggagtctcctgacatgaaaatgaccaaaatattcaataaagatgacctg
gatgataccaacagcctatttgaaaaacttaagcaggaaccagatgctttaactgtgctg
gccccagctgctggagacacaattatctctctagatttcagcagtaatgagtctgatgaa
caacaatgtgatgaagttcctttgtataacgatgtaatgctcccctcatccagtgagaaa
ttgcagaatataaatatggcaatgtccccactacctgcctctgaaactacaaagccactt
cgtagcaatgctgatcctgcactcaatagagaagttgtatcaaagctggagccaaacaca
gagccactcgaactttcttttaccatgcctcaggtgcaagagcaaccaaccagcccttct
gatgcaagtaccagccaaagttcacctgagcccagtagtcccaacgactactgctttgat
gtggataatgatatggccagtgaattcaaactggaattagtggagaaactctttgccata
gatacagaagcaaaaaatccattctctactcaggaaaccgatttagatttagagatgttg
gctccttacatcccgatggatgacgacttccagctgcgctccttcgatcagctgtccccg
ctggagagcagctcgtccagctcccagagcgcagccaccatcaccatattccagcagagt
caggcagccccgagccctgcagaggagatgaagccggcggagcgcgcggacgatgtgaag
acgataattgtcccttcgtctcccgtgcgcggagtcgccgagtccagcagtgcccccgcc
tcgccctacggcgggagcaggagtcgaactgcctctcccatcagagcagggaaaggaaca
gtggatcaggcggaaaagccttctccaggagcacccagcttgctaacggtcactctgaat
aaaagatctactgcactggatgaagaactaaatccaaagatgctagctttgcataatgct
cagagaaaacgaaaaatggaacatgatggttcactttttcaggcagttggaattgggtct
ttattccagcagacaggtgaccgtggaggaaatgcatcacttgcttggaaacgtgtaaag
ggatgcaaaacaaatggtcacagtggagtggagcaaaagacaatcattctactatcaact
gacatagcaagtaaacttctagggcagtcgatggatgagagtggactcccccaactcacg
agttacgactgcgaagtaaacgctcccatacaaggcaacagaaacctgctacagggggaa
gaactgctcagagctctggatcaagttaactga
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