Leptogranulimonas caecicola: ATTO_01140
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Entry
ATTO_01140 CDS
T08581
Symbol
rhlE1
Name
(GenBank) ATP-dependent RNA helicase RhlE
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
lcal
Leptogranulimonas caecicola
Pathway
lcal03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lcal00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ATTO_01140 (rhlE1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lcal03019
]
ATTO_01140 (rhlE1)
Enzymes [BR:
lcal01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
ATTO_01140 (rhlE1)
Messenger RNA biogenesis [BR:
lcal03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
ATTO_01140 (rhlE1)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
HEM4
ResIII
Cas3-like_C_2
DRTGG
Sacchrp_dh_NADP
Rhodanese
AAA_22
Motif
Other DBs
NCBI-ProteinID:
BDC90242
UniProt:
A0AAU9CR46
LinkDB
All DBs
Position
127555..129090
Genome browser
AA seq
511 aa
AA seq
DB search
MTDTPRPAAHSHSVPVAPVSTAQAASSRAASATHEAATRGTQAPQPLDSQPANTASFDQL
GLSPQLLAAVDALGFTAPTPVQADAIPQVLAGHDVLASAQTGTGKTCAFVLPVLQRLQEL
GLKGDAEKPLRRTRTPKGGKGYTRGGKGSSKAAAAKAAGATPGSGTIKPPALIVTPTREL
AQQIEKVTSAVCDHTGQRTVVVMGGARFDAQLKALSRGCELLVATPGRLLDLMERKLVSL
SQVRILVLDEADRMLDMGFWPSVKRILAATPSNKQTLLFSATIPQSMESTVASLLHDPAV
IEIARVGETAKTVEEALMPVVQGQKTELLEALVKRDNYERVLVFCRTKARADAVMQSLKA
AGFSVDVMHADRPQKARQRALEKFRAGKIRLLVATDVMSRGIDVSGIDAVMNYDVPADPE
DYVHRIGRTGRAGAAGHAYTFVAPDEISPLREIEYFMHKLVPVQDLEGFSYAAGRIVPND
RRSTQKPKRTMFSGSRARGRGPAGGRFGRHS
NT seq
1536 nt
NT seq
+upstream
nt +downstream
nt
atgacagacaccccacgccctgcggcacattctcactccgtcccggtcgcacccgtctcg
accgcccaagcggcatcttcccgcgccgcatccgccacacatgaagccgcgactcgcggc
acccaagcgccccagcctctagactcccagcctgccaacaccgcatccttcgaccagctg
ggcctcagccctcagctgctggctgccgtcgacgccctgggcttcacggcccccacgccc
gtccaggccgacgccatcccccaagtcctcgccggccacgacgtgctggcctccgcccag
acgggcaccggaaagacctgcgcttttgtgcttcctgtcctccaacgcctccaggagcta
gggcttaaaggcgatgccgagaaacccctccgccgcactcgcacccccaagggtggcaag
ggatatacgcggggcggcaagggttccagcaaagcggcggccgctaaggcagctggcgcg
actccgggctctggcaccatcaagccgccggcgctcatcgtcactcccactcgcgagctg
gctcagcagatcgagaaggtcaccagcgcggtgtgcgaccacaccggtcagcgcaccgtg
gtggtgatgggcggcgcgcgctttgacgcccagctcaaagcgctctctcgcggatgcgag
ctgctggtggccacccctgggcgcctgctggacctcatggagcgcaagctggtatcactt
tcgcaagtgcgcatcctggtgttggacgaagctgaccgcatgctcgacatgggcttttgg
ccctcggtcaagcgcatcttggcagccacgccgtccaacaagcagacgttgcttttctcg
gcaacgattcctcaatccatggagtccaccgtcgcgtcgctgttgcacgacccggcagtg
atcgagattgcgcgtgtaggcgaaacggcgaagaccgtggaagaggccctcatgccggtg
gtgcaggggcaaaagacagaactgttggaagccttggtaaagcgcgataactatgagcgg
gtgctggtgttttgccgcaccaaagcccgggccgacgcggtgatgcagtcactgaaggct
gcgggcttctcggtagatgtgatgcatgccgaccggccgcaaaaggccaggcaacgggcg
ctggagaagtttcgggcgggaaagatccggctgctggtggccaccgacgtcatgagccgc
ggcatcgatgtgtcgggcatcgacgcggtgatgaactacgacgtgcccgccgatccggaa
gattacgtgcaccgcattgggcgcacgggccgcgccggagccgcaggtcatgcctacact
tttgtggcgccggacgagatcagcccgctgcgcgagatcgagtactttatgcataaactg
gtgcccgtgcaggatcttgagggattctcctatgccgccggtcgcatcgtgcccaacgac
cgccgaagcacccaaaagcccaagcgcaccatgttctcgggatctcgggcgcgtggccgc
ggccctgccggggggcgctttggccgccactcctag
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