Leptogranulimonas caecicola: ATTO_04220
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Entry
ATTO_04220 CDS
T08581
Symbol
mfd
Name
(GenBank) transcription-repair-coupling factor
Organism
lcal
Leptogranulimonas caecicola
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
CarD_TRCF_RID
UvrB_inter
TRCF
ResIII
Cas3-like_C_2
AAA_22
Glyco_tran_WecG
SecA_DEAD
Motif
Other DBs
NCBI-ProteinID:
BDC90550
UniProt:
A0AAU9CCS6
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All DBs
Position
471563..475018
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AA seq
1151 aa
AA seq
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MIIDRIAKQLLADANLSPLVKALAAHQDATLSVGQSGRALMLASLWAKDPRPCLYVVSGE
ELADRAARTLQAWLGLEQVERYPMREDLPWKDTKPNMAVLGARTQALASLATGEPRIVVA
SARALLRRVPPAEVPFWQTLRYEVGQEVPYEEIGGALLAAGYVNLGEAAEPGSFGIHGDN
VDVYPAQGTNPVRLEFFGDEIDRIRRLVPATGQTIGDLDAVEFQPAREYALTDETVKRAE
HALWDRARESSAVAADLEAITARIPNPQTERYLAQLYGSTASPIDHICKEALVCLNEPRA
LFDDCLRAYDDLAASASAAKLKPELAELYTDPRKLDFGSQQRLNFSSLNTAGTPVTAELT
VRQPQIAGSDTRLLGRTRELLRDDFAIAFAVPDRSARQSLELSFGDEHVPFAESLASDPA
NAASILDPEAYKKALPLQAGSVSFFEAPVPAGVIVPSARLAIFSVGDLTARFASRTKSRA
IDPTQVTFPFKPGDYVVHATHGIAKFADIVRREIDGRERDYFLLEYSAGDKLYVPLEQVD
RISRYVGPDGSAPRLTRLNTADWSRATAKARKSAKKLAFDLVELYTRRATVQGYAFSPDD
AAQREMEASFPYPLTSDQSRAINDIKADMEQPKPMDRLLCGDVGFGKTEVALRAAFKCVE
DGRQVMVLCPTTILAQQHYETFQERFAPFGVKVAVLSRFRTAAQQKKSLEEFAKGEADVL
IGTHRLLSRDVNPHNLGLVIVDEEQRFGVQHKEQLKNLREQVDVLTLSATPIPRTLQMSL
SGVRDMSLIMTPPKGRLPVKVHVGEYDSDVVSDAIRAETSRGGQVYYVSNRVTTIDEAVE
RVREAAPEARIGVAHGQMSPREVEDVMERFQTHDIDVLVATTIIESGIDNPHTNTLIIED
SQRLGLAQLYQLKGRVGRGRTQAFAYFLFPGERPLTEEATERLTAINEYQDLGSGMRIAM
RDLEIRGAGSLVGAEQHGNLQQVGFDLFTQMLGEAVSEAKGEVGEVAPAETVVNLSADFF
FDDEYIPEIDKRVLAYRRVAAATELAQVDALEAELEKTYGSLPPAARNLLDRQRIRIRGE
RLGITSVALTGGQLVYMGADVPRDLVPGLKRKGARVFSQSKKLTYPFRKDAEDLVSAALG
VLETLGGDDED
NT seq
3456 nt
NT seq
+upstream
nt +downstream
nt
atgatcatcgaccgtatcgccaaacagcttctggcagacgccaacctgtcgccgttggta
aaggcgctggcagcccatcaagacgccacgctttcggtaggccagtccggccgcgcgctg
atgcttgccagcctgtgggccaaagatcccaggccctgtctttatgtggtctccggcgag
gagctggcagaccgtgcggcccgcacccttcaagcctggctggggctggagcaggtggag
cgctatcccatgcgggaagatctgccctggaaagacactaagcccaatatggcggtgctg
ggcgcccgcactcaggcgctggcaagcctggccaccggcgagccgcgcattgtcgtagcc
agcgcccgggcgcttttgcgccgggtgcctccggcagaggtgcccttttggcaaaccctt
cgctacgaggtgggccaggaggttccctatgaggagatcggcggggcgctgctcgcggcc
ggctacgtgaacttgggcgaggcagcggagccaggctcctttggcatccacggtgacaat
gtggacgtatatccagctcagggcaccaaccccgtgcgcctggagttctttggcgacgag
atcgaccgcatccggcgcctggtgccggccacagggcagaccatcggcgatttggatgcg
gtggagtttcagcctgcccgcgagtatgccctcactgacgagacggtaaagcgcgcggag
catgccctttgggatagggctcgcgaaagctcggcggtggcggcagacctggaagccatc
acggcgcgcattcccaatcctcagacagagcgttacctggcccagctctacgggtcgacg
gcctcgcccatcgatcatatttgcaaggaggcgctggtgtgcctcaacgagcctcgtgca
ctctttgacgactgcttgcgcgcctacgacgacctggcggcctcagccagtgcagccaag
ctcaagccggagctcgcggagctctacacagaccctcgcaagcttgattttggctcccag
cagcgcctgaacttctcttcgctcaatacggccggcactccggtgaccgccgagcttacc
gtgcgccagccgcagatcgccggctctgacacacgccttttaggccgcacccgcgagctt
ttgcgcgatgacttcgccattgcctttgcggtgcccgacaggagcgcccgccagtcgctg
gagctctcctttggcgacgagcacgtgccctttgcagagtcgttggcctcagaccctgcc
aatgctgcctccatattggacccggaggcttacaaaaaagcgctgcctctccaagcgggc
tcggtgagcttcttcgaagcgccggttcctgcaggcgtgatagtgccctctgcccggttg
gcgatcttttcggtaggggacttgacggctcgttttgccagccgcaccaaatcgcgcgcc
atcgatcccacccaggtgaccttccccttcaagcccggcgactacgtggttcatgccact
cacggcatcgccaagttcgccgacatcgtgcgtcgggagatcgacgggcgcgagcgggac
tacttcttgctggagtattcggcgggagacaagctttacgtgccgttggagcaggtggat
cgcatctcgcgctatgtggggccggacgggtcggcgcccaggctcacgcgcctcaacacc
gcggattggtcgcgcgctaccgccaaggcgcgcaagagcgccaaaaaactggcctttgac
ctagtagaactctacactcgccgcgccacggtgcagggctatgccttctcgccggacgac
gctgcccagcgcgagatggaggcaagcttcccctatcctttgacttctgatcaaagccgc
gccataaacgatatcaaagccgatatggaacagcccaagccaatggaccgcctgctctgc
ggcgacgtgggttttggcaagaccgaggtggcccttcgcgccgccttcaagtgcgtggag
gacggtcgccaggtcatggtgctatgccccaccaccatcctggcccagcagcactacgag
accttccaggaacgcttcgcgcccttcggcgtcaaggtggcggtgctttcccgcttcagg
actgccgcccagcaaaagaagtccttggaggagtttgccaaaggcgaggcagatgtgctt
atcggcacccataggctgctgtctcgcgacgtgaacccccacaatctgggtttggtcatc
gtggacgaggagcagcgctttggcgtgcagcacaaagagcagctcaagaacctgcgcgag
caggtggacgtgcttacgctctcggccacgcccatcccgcgcacgctgcagatgagcctc
tcgggcgtgcgcgacatgagcctcatcatgacgccgcccaaaggccgcctgccggtgaag
gttcacgtgggggagtacgactcggatgtggtaagcgatgccatccgtgccgagacaagc
cgcggcgggcaggtgtactacgtgtctaatcgtgtgaccaccatcgatgaggccgtggag
cgcgtgcgtgaggcggcgccggaagcccgcatcggcgtggcccatgggcagatgagcccg
cgcgaggtggaagacgtcatggagcgcttccagactcacgacatcgacgtcttggtggcc
accaccatcattgagagcggtatcgacaaccctcataccaacaccctcatcatcgaggac
tcccagcggctgggtttggctcagctctaccagctcaagggccgcgttggccgcgggcgc
acccaggccttcgcctacttcctgttccctggcgagcgcccgttgaccgaggaggccacc
gagcgcctgaccgctatcaacgagtatcaggatctgggaagcggcatgcgcatcgccatg
cgcgacctggagatccgcggtgcgggatcgctggtgggcgccgagcagcacggcaacctc
cagcaggtgggctttgacctgttcacccagatgctgggcgaggctgtgagcgaggccaag
ggcgaagtgggcgaggtggcgccggcagagacggtggtgaacctctcggcagacttcttc
tttgacgacgagtacatccccgagatcgacaagcgcgtgctggcctaccgccgtgtggcc
gccgccacggagcttgcccaagtggatgcgctggaggccgagctggaaaagacctacggc
tcattgccgccggcagcccgcaacctgttggaccgccagcgcattcgtattcgtggggag
aggttggggatcacctcggtggcgctcaccggaggccagctggtctacatgggcgccgac
gtgcctcgcgacctggtgccgggactcaagcgcaagggcgcccgtgtgttctcccagtct
aaaaagctcacctatcccttccgcaaggacgcagaggatctggtaagcgccgctttagga
gtcttggagactctgggcggcgatgatgaagactag
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