Leptogranulimonas caecicola: ATTO_04700
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Entry
ATTO_04700 CDS
T08581
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
lcal
Leptogranulimonas caecicola
Pathway
lcal03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
lcal00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
ATTO_04700 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lcal03021
]
ATTO_04700 (rpoC)
03400 DNA repair and recombination proteins [BR:
lcal03400
]
ATTO_04700 (rpoC)
Enzymes [BR:
lcal01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
ATTO_04700 (rpoC)
Transcription machinery [BR:
lcal03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
ATTO_04700 (rpoC)
DNA repair and recombination proteins [BR:
lcal03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
ATTO_04700 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RNA_pol_A_CTD
HHH_5
Motif
Other DBs
NCBI-ProteinID:
BDC90598
UniProt:
A0AAU9CVK4
LinkDB
All DBs
Position
536874..541292
Genome browser
AA seq
1472 aa
AA seq
DB search
MADFDTTDFDAIKISLASADQIRSWSHGEVKKPETINYRSLKPERDGLFCEKIFGPSKDW
ECACGKYKGIRFKGIVCDRCGVEVTSSKVRRERMGHIELAAPVSHIWYFKSPTSFPLARI
LDMKSKDLEKILYFASYVITRVDKEAREADVTELEADCAADIEELKTERDEQITALEEQV
AEDRAEGLEAMSDEDLRLEKADIEAEYQEEIELRQEAHNKFMEIEKGDLIADEALFREMK
RYYSIYFDGGMGAEAVRDLLADIDLEKTAEELRLILQDEKGQKQRREKAVKRLEIIEAFM
EGGNDPTNMILDVIPVIPPDLRSMVQLDGGRFASSDLNDLYRRVINRNNRLKRLLDLDAP
AIIVNNEKRMLQEAVDALFDNGRRGRPVTGRGGRPLKSLAETLKGKQGRFRQNLLGKRVD
YSGRSVIVVDPQLKLHQCGLPKTMALELFKPFVMRRLVELGKVENIKGAKRAIDRMEPGV
WDVLEEVIADRLVLLNRAPTLHRLSIQAFEPVLTEGKAIHLHPLVCKPFNADFDGDQMSV
HVPLSTQAQTEARVLMLSSNNLRTPASGKVLTVPSQDMVFGVYYLTSESSQEQAEPRVFA
DFEDVIHAYDARADLDIQAKISVRVGPEDANVQTEDDRLFFRVMTSKNEHVDYDVTEGAV
RVETTAGRVIFNRQCLPPDYPFINYKMTSSDMGRLVNDCCDRYALADVEPILDAIKYAGF
HYATRAGLTISVWDAVIPEEKEKMLADTQEQVDTINENYEMGFLSEAERHTEVVDAWTKC
TDELGSVMLKGFSEDNPIYMLADSGARGSKTQLRQLAGMRGLMADMSGDTIDLPIKANFR
EGLRPLEYFISTYGARKGLVDTSSHTSDSGYLTRRLVDVAQDVIVREADCGTTEGVSYRL
VLPGTDDLNVDLVGRCLLEDVVDPATGEILMEKDAYIESVDDIKRLADAGLEKVKFRALL
TCRSKYGVCQKCYGWDLSTRRPVNIGTAVGIIAAQSIGEPGTQLTMRTIHSGGVAGAEDI
TQGLPTVGRMFDVVGNVNEKILGREADLAPYSGELHIVPEQNTYKLSIVDEQDPSRELWA
KDVPASVRFMPGIEDGCIVRAGDQLTHGFVNFRNLRKLTDIESTMHTFVESVKSVYTSQG
VDLNDKHIEVIARQMLRRVQITNPGDSKYLLGQYVDRYEFADKVNEIAMAGGTPPTAEPA
ILGTLKVASSIDSWLSSASFIRTAGVLTEAAIKGEVDNLMDLKSNVIVGKQIPAGTGLKA
YHDVELTYHGQPIETSTSPISKALPEWAPDELKALESELPQQLEWTGDEYIPGTYSKNGH
KLSSEESKLHLFDDLGVSQRWTNKFSEVGIETVGDLIGKTEDDLLHIDGIGAKAIEELRD
GLEARNLLYILEPDEEDQADEDDLSQLLNMVFAPDDNIMIGTRAPSTHQGYEEELIGGTA
TDNINPQAINEDIDSLDDILAQVTHQEEMLGE
NT seq
4419 nt
NT seq
+upstream
nt +downstream
nt
gtggcagatttcgataccacagattttgacgcgattaagatctctttggcgtctgccgat
cagatccgctcctggtctcatggcgaggtcaaaaagcccgagaccatcaactaccgctcc
ttgaagcctgagcgcgacggtcttttctgcgagaagatcttcggtccctccaaggactgg
gagtgcgcctgcggcaagtacaagggcatccgcttcaagggcatcgtgtgcgaccgctgc
ggcgtggaggtcaccagctccaaagtccgtcgcgagcgcatgggccacatcgagctggcc
gctcctgtaagccacatttggtacttcaagagccctaccagcttcccgttggcccgcatt
ctggacatgaagtccaaggatctggagaagatcctctacttcgccagctatgtgatcacc
cgcgttgacaaagaagcccgcgaggctgacgtcaccgagcttgaggccgattgcgctgca
gatatcgaggaactcaagactgagcgcgacgagcagatcaccgcgctcgaggagcaggtg
gccgaggatcgcgccgagggcctagaggccatgagcgacgaggaccttcgtctggaaaag
gctgatatcgaggccgagtaccaagaggagatcgagcttcgccaggaggcccacaacaag
ttcatggagatcgagaaaggcgacctcatcgccgatgaggctctcttccgcgagatgaag
cgctactactccatctatttcgatggcggtatgggcgccgaagccgtgcgcgatcttttg
gcagacattgacctggagaagacggccgaagagctgcgtctcatccttcaggacgagaag
ggtcaaaagcagcgtcgcgagaaggccgtaaagcgtctggagatcatcgaggccttcatg
gagggcggcaacgaccccaccaacatgatcctggacgtcattcctgtgattccgcccgat
ctgcgctccatggtgcagttggacggcggccgcttcgcctcctctgacttgaacgacctc
tatcgccgtgtgatcaaccgcaataaccgtctcaagcgcctgctggacctggatgctccc
gccatcatcgtgaacaacgagaagcgcatgctccaggaggcagtggacgccctctttgac
aacggccgccgtggccgtcctgtcactggtcgcggtggccgccctctcaagagtctcgcc
gagaccctcaaaggcaagcagggccgcttccgccaaaacctgttgggcaagcgcgtggac
tattctggccgttcggtcatcgtggtcgacccgcaactcaagctgcaccagtgcggcttg
cccaagaccatggctctggagctgttcaagcccttcgtcatgcgccgcttggtagagctg
ggcaaggtggagaacatcaagggcgccaaacgcgctatcgaccgcatggagcccggtgtc
tgggacgtgctggaagaggtcatcgcagaccgtctggtgctcctcaaccgcgctcctacg
ctgcaccgtctctccatccaggcctttgagcctgtccttaccgagggcaaggccatccac
ctgcacccgctggtctgcaagcccttcaacgcagacttcgacggcgaccagatgtctgtg
catgtgcctctgtccacgcaggctcaaacagaggcccgcgtgctcatgctgtcctccaac
aaccttcgcactcccgcctcgggcaaggtgctcaccgtgccttctcaggacatggtgttt
ggcgtctactacctcaccagcgagagcagccaggagcaggcagagcctcgcgtcttcgca
gacttcgaggacgtcatccatgcctatgacgctcgcgcagacctcgacattcaggccaag
atctccgtgcgtgtgggccctgaggacgccaatgtgcagacggaggatgaccgtctcttc
ttccgtgtcatgacctccaagaacgagcacgttgactacgacgtcaccgaaggcgccgtg
cgtgtggagaccaccgcaggtcgcgtgatcttcaaccgtcagtgcctgccgcccgactat
cccttcatcaactacaagatgacctcctccgacatgggtcgtctggtaaacgactgctgc
gaccgctatgcgttggcagacgtcgagcccatcttggacgccatcaagtacgccggcttc
cactacgccactcgcgccggccttaccatctccgtctgggatgccgtcatccctgaggag
aaggagaagatgctggccgatacccaggagcaggtcgataccatcaacgagaactacgag
atgggcttcctgtctgaggccgagcgccacaccgaggttgtcgatgcctggaccaagtgc
accgacgagctgggttccgtcatgctcaagggcttctcggaagacaaccccatctacatg
ctggccgattccggcgcccgtggttccaagactcagctgcgtcagctggccggtatgcgt
ggcctcatggcagacatgtccggtgacaccatcgacctgcccatcaaggccaacttccgc
gaggggctgcgtcctctggagtacttcatctccacctatggcgcccgtaagggtctggtg
gacacctcttcgcacacctctgactccggttacctcacccgccgtttggtagacgtggcc
caggacgtcattgtgcgcgaggctgactgcggcaccaccgagggtgtgtcctatcgcctg
gtgcttcctggcaccgacgacctaaatgtcgatctggtaggccgctgcctgctggaggat
gtggtcgatcctgctaccggcgagattcttatggaaaaggatgcttacatcgagagcgtc
gatgacatcaagcgcctggcggacgcgggccttgagaaggtcaagttccgtgcactgctc
acctgtcgttccaagtacggcgtctgccagaagtgctatggctgggacctttccacccgc
cgtcctgtcaatatcggcaccgcagtgggcatcattgccgctcagtccatcggcgagccc
ggcacgcagctcaccatgcgtaccattcactccggtggcgtggccggcgccgaggacatc
acccagggcctgcctaccgttggccgtatgttcgacgtggtaggcaacgtcaacgagaaa
atcctgggccgcgaggcagatctggctccctactcgggcgagctgcatatcgtgcctgag
caaaacacctacaagctctccatcgtggacgagcaggatcccagccgcgagctttgggcc
aaagacgtgcccgcttccgtgcgcttcatgcctggcatcgaagacggctgcatcgtgcgc
gccggcgaccagctcacccatggcttcgtgaacttccgcaacctgcgcaagctcaccgac
atcgagtccaccatgcacaccttcgtggagtcggtgaagtcggtctacacctctcagggc
gtcgacctcaacgacaagcacatcgaggtcatcgctcgccagatgctgcgccgcgtacag
atcaccaaccccggtgactccaagtacctgcttggccagtatgtggaccgctacgagttc
gccgacaaggtcaacgagatcgccatggccgggggcacgcctcctaccgctgagcctgcc
atcctgggcaccctcaaggtggccagctccatcgactcctggctctccagcgcttccttc
atccgtaccgccggcgttcttactgaggccgctatcaagggcgaagtggacaacctcatg
gacctcaagtccaacgtcatcgtgggcaagcagattcctgccggtaccggcctcaaggcc
taccacgatgtggagctcacctaccacggccagcccatcgagacctccacgtctcccatt
tccaaggcgctgcccgagtgggcccccgacgagctcaaggcgctggagtccgagctgcct
cagcagcttgaatggactggcgacgagtacattcccggcacctactccaagaacggccac
aagctgtcctccgaggagagcaagctccatctcttcgacgatcttggggtgtcccagcgg
tggaccaacaagttcagcgaggtaggcatcgagaccgtgggcgatcttatcggcaagacc
gaggatgatctgctccacatcgacggcatcggagccaaggccatcgaggagctgcgcgac
ggtctggaggctcgcaacctgctctacatcctggagcccgacgaagaggaccaggccgac
gaggacgatctgtcccagctgctcaacatggtgtttgctcccgacgacaacatcatgatc
ggtacccgcgccccctccacgcaccagggttatgaggaggagcttatcggtggcactgcg
accgataacatcaatcctcaagcgatcaacgaggatatcgactcgctggacgacattttg
gcccaggtgacccatcaagaggaaatgctgggcgaataa
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