Leptogranulimonas caecicola: ATTO_05050
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Entry
ATTO_05050 CDS
T08581
Symbol
rpoA
Name
(GenBank) DNA-directed RNA polymerase subunit alpha
KO
K03040
DNA-directed RNA polymerase subunit alpha [EC:
2.7.7.6
]
Organism
lcal
Leptogranulimonas caecicola
Pathway
lcal03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
lcal00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
ATTO_05050 (rpoA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lcal03021
]
ATTO_05050 (rpoA)
03400 DNA repair and recombination proteins [BR:
lcal03400
]
ATTO_05050 (rpoA)
Enzymes [BR:
lcal01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
ATTO_05050 (rpoA)
Transcription machinery [BR:
lcal03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
ATTO_05050 (rpoA)
DNA repair and recombination proteins [BR:
lcal03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
ATTO_05050 (rpoA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_A_bac
RNA_pol_A_CTD
RNA_pol_L
AMIN-like
RNA_pol_L_2
SAM_EPH
Motif
Other DBs
NCBI-ProteinID:
BDC90633
UniProt:
A0AAU9CJL6
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All DBs
Position
560149..561090
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AA seq
313 aa
AA seq
DB search
MSEFIRPQVSVEEVKTNVARVTVEPLEGGFGDTLGNSIRRVLLSSLEGAAVRAIRIDGVQ
HEFSTVEGVYEDVTDIVLNVKKLVFQRTGSAEEAEAEVNIEGPATVSGADFLVPAGFELV
NPELVICHLGEGAHLKMTLYLGCGRGYVSGENNEGDNDAIGIIHVDSLYSLVRRCAKTVE
PCRVGQHTDFDRLVLEVETNGAKDPREAVVEAANIINQHMSAFMTLNEEGDHEEEVSIFV
SNEEDDNSELDKPIEGLDLSVRSYNCLKRAGIHTVRQLVDYSENDLLNIRNFGVKSIEEV
KDKLESMGLGLKA
NT seq
942 nt
NT seq
+upstream
nt +downstream
nt
atgtccgaattcatccgaccgcaggtgtcggtagaagaggtcaagaccaacgtcgcccgc
gtgaccgtcgagcccctggaaggcggctttggcgacaccctcggcaactccattcgccgc
gtgctcttgtctagcctggagggcgcagctgttcgtgctattcgtatcgacggcgtgcag
catgagttctctacggtagagggcgtctatgaggacgtcaccgatatcgtcctcaatgtg
aagaaactcgtcttccagcgcaccggctctgccgaggaagctgaggctgaggtcaacatc
gagggtcccgccactgtctctggtgcggatttcttggtgcctgcaggttttgagctggtc
aatcccgagctcgtcatctgccacctgggtgagggcgctcatctcaagatgaccctctat
ctgggctgtggccgtggctatgtctctggtgagaacaacgagggcgacaacgatgccatc
ggcatcatccacgttgattccctctactctcttgtgcgtcgctgtgccaagaccgtcgag
ccttgtcgcgtgggtcagcatactgacttcgatcgcctggtgctcgaggtggagaccaat
ggcgccaaggatcctcgtgaggctgtggtcgaggccgccaacatcatcaatcagcacatg
agcgcattcatgacgctgaacgaggaaggcgaccacgaggaagaagtgtccatcttcgtg
agcaacgaggaggacgacaactctgagctcgacaagcctatcgagggcctcgacctcagc
gtgcgttcctacaattgcctcaagcgcgccggtatccacaccgtgcgccagctggtggac
tactcggagaatgacctcctcaacatccgcaacttcggcgtgaagtccatcgaggaagtc
aaggataagctcgagtctatgggcctgggcctcaaggcttaa
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