Leptogranulimonas caecicola: ATTO_16160
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Entry
ATTO_16160 CDS
T08581
Name
(GenBank) DNA helicase
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
lcal
Leptogranulimonas caecicola
Pathway
lcal03420
Nucleotide excision repair
lcal03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
lcal00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
ATTO_16160
03430 Mismatch repair
ATTO_16160
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lcal03400
]
ATTO_16160
Enzymes [BR:
lcal01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
ATTO_16160
DNA repair and recombination proteins [BR:
lcal03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
ATTO_16160
MMR (mismatch excision repair)
Other MMR factors
ATTO_16160
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
PcrA_UvrD_tudor
AAA_30
Viral_helicase1
AAA_12
Motif
Other DBs
NCBI-ProteinID:
BDC91744
UniProt:
A0AAU9D9E2
LinkDB
All DBs
Position
complement(1849926..1852412)
Genome browser
AA seq
828 aa
AA seq
DB search
MADSVVDIDSLNDAQREAVLDCEGPLLVLAGAGSGKTRVLTYRIAHMIGDLGYRPWQILA
ITFTNKAAAEMRERLGALLPGGTRGMWVCTFHAMCVRILRQDGERLGYGPNFTIYDDDDS
KRLVKAIMGDLNIDPKRFPLNMIRSKISAAKNAMVTPDDMRQDADDPAVAKAALVYEELQ
RRLLAANAMDFDDLLVNALELLTKFPDVLEGYQDRFLQISVDEYQDTNHVQYLITKLLAA
KHQNLMVVGDDDQSIYSWRGADIQNILDFEKDYPAAHVVKLQQNYRSSGHILAAANAVVA
HNSKRKPKKLFTNLGDGELVQVYQAANESDEGTWIAAQIEKLHVKGTSYDDMAVFYRTNA
QSRIIEDMFLRAGVPYKIVGGTRFFDRAEIRDVTSYLKLVLNPADDVAARRIVNVPRRGI
GATSQDKIGAYAAAHRLSFFEAAQACVAEEGLLTPRVRNALASWTSTIEQARHYTGELSR
VIEAIVDKSGLISALEAEHTPEAQGRVENIREFMLIAQEFDESHEDVVSALETIDELRDS
GVLAEEDLPTLAATAPEGTLFSAAEASSQGVLPGIPAGAQAPGVAGAFLEERFEPVACAQ
LPAFMEWLALRSDLDSLAGQNSAVTLMTIHSAKGLEFPVVFVAGMEENLFPNLTFENDPA
RLEEERRLAYVAITRARQRLFLTYAATRRTYGATQANPRSRFINEIPPEHLKATGVGSAG
FSGTGWEKRGDRHGTFGAGRGSEMYGGTVFVNRTRSAGGASGPAPVAKPRRDPKAAAESF
AVGDRVSHKTFGVGEVLSAKGDVIEVRFTKSGQVKKLMKGFAPIVKVE
NT seq
2487 nt
NT seq
+upstream
nt +downstream
nt
atggcagacagcgtggttgatatcgactcgctcaatgacgcccagcgcgaggccgtgctg
gattgcgaagggccgctgctggtgctggcgggggcgggctcgggcaagactcgggtgctc
acctaccgcatcgcgcacatgattggcgacttgggctaccgcccttggcagattctggcc
atcaccttcaccaacaaggctgcggccgagatgcgcgagcgcctaggcgccctgttgcct
gggggcacccgcggcatgtgggtgtgcaccttccatgccatgtgcgtgcgcatcctgcgg
caagacggcgagcgcctgggctatggccccaatttcaccatttacgacgacgacgattca
aaacgcctggtgaaggccatcatgggcgacttgaacatcgatcccaagcgctttccgctc
aacatgatccgctccaagatctcggcagccaaaaacgccatggtgacgccggacgacatg
cgccaagacgccgacgaccccgcggtggccaaggctgccttggtctacgaggagctccag
cgccgcctgctggccgccaacgccatggacttcgacgacctgctggtaaacgccttagag
cttttgaccaagttcccggacgtgctggagggctatcaggaccgcttcttgcagatctcg
gtggacgagtatcaagacaccaaccatgtgcagtacctcatcaccaagctgttggccgcc
aagcatcaaaacctcatggtggtgggcgacgacgaccagtccatctactcctggcgcggt
gccgacatccaaaacatcctggactttgagaaggactatccggccgcccacgtggtgaag
cttcagcaaaactatcgctcaagcggccatatcctggcggcggccaacgccgtggtggcc
cacaactcaaagcgcaagcccaaaaagctcttcaccaatctaggcgatggcgagctggtc
caggtctatcaagcggccaacgagagcgacgagggcacctggatcgccgcccaaatcgag
aagctccatgttaaaggcaccagctacgacgacatggcggtcttctaccgcaccaacgcc
cagagccgcatcatcgaagacatgttcctgcgtgccggcgtgccctacaagatcgtggga
ggcacccgcttcttcgaccgcgccgagatccgcgacgtcacctcctacctcaagctggtg
ttgaaccccgcagacgacgtggctgcaaggcgcatcgtcaacgtcccccgtcgaggcatc
ggcgccacctcccaggacaagatcggcgcctacgccgctgcccaccgcctctccttcttc
gaggccgcccaggcctgcgtggccgaggaaggcctgctcaccccgcgcgtgcgcaacgcg
ttggcctcctggacctccaccatcgagcaggcgcgccactacaccggcgagctctcccgc
gtcatcgaggccattgtggacaagagcggcctcatctccgccctggaggccgagcatacc
cccgaggcccagggccgcgtcgagaacatccgcgagttcatgctcatcgcccaggagttc
gacgagagccacgaggacgtggtctcagccttagagactatcgacgagctgcgcgattcc
ggcgtccttgccgaggaggacctgcccaccctggctgccacagcccccgagggcacgctt
ttctcggcagcagaggcctcttcccaaggagtgctgccggggattcctgcgggcgcccaa
gctccgggtgtggctggggcctttctggaggagcgcttcgagccggtggcctgcgctcag
cttcccgccttcatggaatggctggcattgaggagcgacctggactcgctggcggggcag
aactccgcggtgacgctgatgaccatccactcggccaagggcctggagtttcccgtggtc
tttgtggccggtatggaggagaacctcttccccaacctcaccttcgagaacgacccggcg
cggctggaggaggagcgtcgcctggcctacgtggccatcacccgagcccgccagcgtctg
ttcctcacttatgccgctacccggcgtacctacggcgcgacgcaggcgaatcctcgcagc
cgcttcatcaacgagatcccgcccgagcacctcaaggctaccggcgtggggtcggcgggc
ttctcgggaacgggctgggagaagcgcggcgaccgccatggcacttttggtgcgggccgc
ggctccgagatgtatggcggcaccgtctttgtcaatcgcacgcgctcggccggcggggct
tctggccccgctcctgtcgccaagccgcgccgagaccccaaggctgcagccgagtccttt
gctgttggcgaccgcgtgagccacaagacctttggcgtgggcgaggtgctctcagccaag
ggcgacgtcatcgaggttcgctttaccaagagcggccaggtgaagaagctcatgaagggc
ttcgcgcccatcgtgaaggtggagtag
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