Lysinibacillus capsici: ICJ70_01170
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Entry
ICJ70_01170 CDS
T08448
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
lcap
Lysinibacillus capsici
Pathway
lcap03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
lcap00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
ICJ70_01170 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lcap03021
]
ICJ70_01170 (rpoC)
03400 DNA repair and recombination proteins [BR:
lcap03400
]
ICJ70_01170 (rpoC)
Enzymes [BR:
lcap01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
ICJ70_01170 (rpoC)
Transcription machinery [BR:
lcap03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
ICJ70_01170 (rpoC)
DNA repair and recombination proteins [BR:
lcap03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
ICJ70_01170 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
Peptidase_M23
Motif
Other DBs
NCBI-ProteinID:
UNT55750
LinkDB
All DBs
Position
243718..247401
Genome browser
AA seq
1227 aa
AA seq
DB search
MIDVNEFEYMKIGLASPDKIRSWSYGEVKKPETINYRTLKPEKDGLFCERIFGPTKDWEC
HCGKYKRVRYKGVVCDRCGVEVTRAKVRRERMGHIELAAPVSHIWYFKGIPSRMGLILDM
SPRALEEVIYFASYVVIDAGATNLESKQLLSEKEYRAYREKFGNTFEASMGAEAIKKLLG
KIDLEDETQSLKEELKSAQGQRRTRAIKRLEVVESFRNSGNSPEWMILDVLPVIPPELRP
MVQLDGGRFATSDLNDLYRRVINRNNRLKRLLDLGAPSIIVQNEKRMLQEAVDALIDNGR
RGRPVTGPGNRPLKSLSHMLKGKQGRFRQNLLGKRVDYSGRSVIVVGPNLKMYQCGLPKE
MAIELFKPFVMKELVERGLAHNIKSAKRKIERLNNDVWDVLEDVIREHPVLLNRAPTLHR
LGIQAFEPTLVEGRAIRLHPLVCTAYNADFDGDQMAVHVPLSAEAQAEARLLMLAAQNIL
NPKDGKPVVTPSQDMVLGNYYLTLEREGARGEGTVFYGPNEVLIAYDTGHVHLHTRIAIK
ASSLNNPTFTEEQNNMFLLTTVGKVIFNEILPESFPYINEPTDFNLEQVTPEKYFAKLTI
DEETLKELESDNAYNNLDEKGKIDAQRTAVLRKYFASVPVVNPFRKKFLGNIIAEVFKRF
HITETSKMLDRMKNLGFKYSTRAGITVGVSDIVVLPDKGEILAEAQEKVDKVQAQFRRGF
ITEDERYDRVISSWSAAKDEIQAKLMKSLEKTNPIFMMSDSGARGNASNFTQLAGMRGLM
ANPAGRIIELPIKSSFREGLTVLEYFISTHGARKGLADTALKTADSGYLTRRLVDVAQDV
IVREDDCGTDRGLTIGALMEGTELIEALDERIVGRHTKKTIFHPETGEVILAKDGLIDQD
IARAIIEAGIEEVTIRSAFTCNTKHGVCKKCYGMNLATGEKVEVGEAVGIIAAQSIGEPG
TQLTMRTFHTGGVAGDDITQGLPRIQEIFEARNPKGQSVISEIAGTVSDITEIREGLKEI
TIQGDVETRKYQAPYNARLKVIEGDNVERGQVLTEGSIDPKQLLKVKDVSTVQEYLLKEV
QKVYRMQGVEIGDKHIEVMVRQMLRKVRVIEAGDTELLPGSLLDIHQFSEANVDAVMNGK
NPATCRPVILGITKASLETESFLSAASFQETTRVLTDAAIKGKRDELLGLKENVIIGKLV
PAGTGMQRYRQIRIEKDELDTEVVSAE
NT seq
3684 nt
NT seq
+upstream
nt +downstream
nt
ttgatagacgttaatgaatttgaatatatgaaaattggtttagcatcacctgacaagatt
cgttcttggtcatatggagaggttaaaaaacctgaaacaattaactaccgtacactaaaa
ccagaaaaagatggtttattctgtgagcgtatttttggtccaactaaggactgggagtgt
cactgtgggaaatataaacgtgtacgctataaaggcgtagtttgtgatcgttgtggcgtt
gaagtaacacgtgctaaagttcgtcgtgaacgtatggggcatatcgaattagcagcacca
gtttctcatatctggtacttcaaaggtattcctagccgtatgggtctaattttagatatg
tcacctcgtgctcttgaagaagttatctatttcgcttcatacgttgtgatcgatgcaggt
gctactaatttagaaagtaaacaattactttctgaaaaagagtatcgtgcataccgtgaa
aaattcggtaatacattcgaagcatcaatgggtgcagaagcaatcaaaaaattattaggt
aaaatcgacctagaagatgaaacacaatctttaaaagaggagttaaaatctgctcaaggt
caaagacgtactcgtgccattaaacgtctagaagttgttgaatctttccgtaactcagga
aactcacctgaatggatgattctggatgtactacctgttattccaccagagcttcgtcca
atggtgcaattagatggtggtcgtttcgcgacttcagatttaaacgatttataccgtcgt
gtaattaatcgtaataaccgtttaaaacgtttattagatttaggtgctccaagcatcatc
gtacaaaatgaaaaacgtatgttacaagaagctgttgatgcattaatcgataatggtcgt
cgtggacgtcctgtaacaggtcctggtaaccgtccattaaaatcactttcacatatgttg
aaaggtaaacaaggtcgtttccgtcaaaatctacttggtaaacgtgttgactactctggt
cgttctgttatcgtagtaggtccaaacttaaaaatgtaccaatgtggtttaccaaaagaa
atggctattgaattattcaagccattcgttatgaaagaattagtagagcgtggtcttgct
cataacattaaatctgctaaacgtaaaatcgaacgtttaaataacgacgtatgggacgtt
ttagaagatgttatccgtgagcatccagtattactaaaccgtgcaccaacgcttcaccgt
cttggaattcaagcatttgaaccaacactagttgaaggtcgtgctattcgtcttcaccca
ttagtatgtacagcctataatgctgacttcgatggtgaccaaatggcggttcacgtacca
ttatcagctgaagctcaagctgaagctcgtcttctaatgcttgctgcacaaaacatcctg
aatccaaaagacggtaaaccagttgtaacaccttctcaagatatggtattaggaaactac
tacttaacacttgaacgtgaaggcgcacgcggtgaaggtactgttttctatggtccaaat
gaagttttaattgcctatgatacaggtcatgtacacttgcatacacgtatcgcaataaaa
gcaagttcattaaataatccaacattcactgaagaacaaaataatatgttcttattaaca
actgttggtaaagtaatctttaatgaaatcttgccggaatcattcccttatattaatgag
ccaactgatttcaacttagagcaagtaacaccagaaaaatactttgctaagttaacaatt
gatgaagaaacacttaaagagcttgaatcagataatgcttataataatttagatgaaaaa
gggaaaattgatgcacaacgtacagctgtattgcgtaaatactttgcatcagtacctgtt
gtaaatccattccgtaagaaattcttaggaaatatcattgctgaagtatttaaacgtttc
cacattacggaaacatctaaaatgcttgaccgtatgaaaaacctaggtttcaaatattca
acacgtgcaggtattactgtaggtgtatctgacatcgtggtattacctgataaaggtgaa
attttagcagaggctcaagagaaagtagataaagttcaagcgcaattccgtcgtggtttc
attactgaggatgagcgttacgatcgcgtaatttcaagctggagtgctgcaaaagatgaa
attcaagcgaagctgatgaagtcacttgagaaaacaaacccaattttcatgatgtctgat
tcaggtgcccgtggtaatgcatctaactttactcagctagctggtatgcgtggtctgatg
gccaacccagctggtcgtattatcgaacttccaatcaaatcttcattccgtgaaggttta
acagtattagaatacttcatctcaactcacggtgctcgtaaaggtcttgccgatacagcc
ctaaaaactgccgattcaggttacttaacacgtcgtcttgttgacgttgcacaagatgtt
atcgttcgtgaagatgactgtggtactgaccgtggtttaacgattggtgcattaatggaa
ggcacagagttaattgaagctctagatgaacgtattgttggtcgtcatacgaagaaaaca
atcttccaccctgaaactggtgaagtaattcttgcaaaagacggtttaatcgaccaagat
atcgctcgtgcaattatcgaggcgggtattgaagaagtgacaatccgttcagcatttaca
tgtaatacaaaacacggcgtttgtaaaaaatgttacggcatgaacttggcgacaggtgag
aaggttgaagttggggaagcagttggtattattgctgctcaatcaatcggtgaaccaggt
acacagttaacaatgcgtacattccatacaggtggggttgccggagatgatattacacaa
ggtcttccacgtatccaagagatctttgaagcacgtaatccaaaaggtcaatctgttatt
tcagaaatcgctggtacggtttcagatatcacagaaattcgtgaaggcttaaaagaaatt
acaattcaaggtgacgtagaaactcgtaagtatcaagcaccttataacgcacgtttgaaa
gttatcgaaggtgataatgtagaacgtggtcaagttttaacagaaggttctatcgatcca
aaacaattgctaaaagtcaaagacgtttcaactgttcaagaatatttattaaaagaagtt
caaaaagtataccgtatgcaaggggtagaaattggggataaacacattgaggtaatggtt
cgccaaatgcttcgaaaagtgcgtgtaattgaagctggagatacagaattactacctggc
tcattattagatatccaccaattctcagaggcaaacgtagacgctgttatgaatggcaaa
aaccctgcaacttgtcgtcctgttatcctgggtattacaaaagcttctcttgaaacagaa
tcattcttatctgcagcatcgttccaagaaacaacacgtgtgttaacagatgcagcaatt
aagggtaaacgtgacgagcttcttggattaaaagagaacgtaattatcggtaaacttgtt
cctgcaggtactggtatgcaacgttatcgtcaaatccgcatcgaaaaagatgagcttgac
acagaagtcgtttctgctgaataa
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integrated database retrieval system
