Lysinibacillus capsici: ICJ70_03125
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Entry
ICJ70_03125 CDS
T08448
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
lcap
Lysinibacillus capsici
Pathway
lcap03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lcap00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ICJ70_03125
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lcap03019
]
ICJ70_03125
03009 Ribosome biogenesis [BR:
lcap03009
]
ICJ70_03125
Enzymes [BR:
lcap01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
ICJ70_03125
Messenger RNA biogenesis [BR:
lcap03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
ICJ70_03125
Ribosome biogenesis [BR:
lcap03009
]
Prokaryotic type
rRNA helicases
ICJ70_03125
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Helicase_RecD
ERCC3_RAD25_C
Motif
Other DBs
NCBI-ProteinID:
UNT56107
LinkDB
All DBs
Position
597984..599492
Genome browser
AA seq
502 aa
AA seq
DB search
MTNFSELNISESTLRSVKRMGFEEATPIQEGTIRFAIEGRDVLGQAQTGTGKTAAFGIPL
IEKIDPKNPNIQALVIAPTRELAIQVSEELYKIGYDKRVKLLSVYGGQEIGRQIRALKNR
PQIIVGTPGRIIDHINRRTLKLEDVQTLVLDEADEMLNMGFIDDINSILENVPSERQTLL
FSATMPPAIRKIAETFMRDPEIVKIKAKELTVDNIDQYFVKSAEREKFDVLSRLLNVHQP
ELAIIFGRTKRRVDELAQALSIRGYLAEGIHGDLSQAKRISVLRQFKENKIDILVATDVA
ARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKSGLAVTFVTPREMGYLRIVEETTK
KRMTPLRPPTTDEALEGQQRLAVETLEGLIANNNLGDYRTFAAELLENHDAVDVVAAALR
SLTREPDDTPVTITEERPLPMRRERSSNNRGGGDRGRGNRSFGGGRRDNARSGERRSSSS
RREGGRREGGQGRSRSPRRHEG
NT seq
1509 nt
NT seq
+upstream
nt +downstream
nt
ttgacaaatttttcagaattaaatattagcgaatctacattacgctctgtaaagcgtatg
ggatttgaagaagcaacaccaatccaagaaggtactattcgttttgcaattgaaggccgc
gatgtattaggtcaagcacagacaggtactggtaaaactgccgctttcgggattccacta
attgaaaaaatcgatccaaaaaaccctaatattcaagcattagtcattgctccaactcgt
gagttagcgattcaagtttcagaagagctttataaaattggctatgacaaacgcgtaaaa
ttattatcagtatacggtggtcaagaaattggccgtcaaatacgtgcactgaaaaataga
cctcaaatcattgttggtacgccaggtcgtattattgatcatataaatcgtcgtacgtta
aaattagaagatgttcaaacattagtattggatgaagcagatgaaatgttaaacatgggc
tttatcgatgatattaattcaatcttagaaaacgtaccttctgagcgccaaacattactt
ttctcagcaacaatgccaccagcaatccgtaaaattgcagaaacatttatgcgtgatcca
gagattgtaaaaattaaagcaaaagaattaactgttgataacattgatcaatattttgtt
aagtctgctgagcgtgaaaaattcgatgtcttatctcgtttattaaatgtacaccaaccg
gagctagctattatatttggtcgtacaaaacgtcgtgtagatgagcttgcacaggcccta
tctattcgtggctatttagctgaaggtattcatggtgatttaagccaagcgaagcgtatc
tcagtattacgtcagtttaaagaaaataaaatcgatatccttgttgcgactgatgtagcc
gctcgtggacttgatatttctggtgtaacacatgtttataactttgatattcctcaagat
cctgaatcatatgttcaccgtattggccgtacaggtcgtgccggtaaatcaggtcttgca
gtaacatttgtaacaccacgtgaaatgggttacttacgtattgtagaagaaactacgaaa
aaacgtatgacacctcttcgcccaccaacaacggatgaagcattagaaggtcaacaacgt
ttagctgtggaaacattggaaggtcttattgctaataacaatttaggtgattaccgcaca
tttgcagcagaattactagagaatcatgatgcagtcgatgttgttgcagctgctctacgt
tcattaacaagagagccagacgatacaccagtaacaatcacagaagaacgtccattacca
atgcgtcgtgaacgttctagcaataatcgtggtggcggtgatcgtggccgcggaaaccgt
agctttggtggaggacgtcgtgacaatgctcgcagtggagagcgtcgcagtagcagtagc
cgtcgagagggtggacgccgtgaaggtggacaaggtcgttctcgttctccaagacgtcac
gaaggataa
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