Lysinibacillus capsici: ICJ70_10260
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Entry
ICJ70_10260 CDS
T08448
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
lcap
Lysinibacillus capsici
Brite
KEGG Orthology (KO) [BR:
lcap00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
lcap03016
]
ICJ70_10260
Enzymes [BR:
lcap01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
ICJ70_10260
Transfer RNA biogenesis [BR:
lcap03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
ICJ70_10260
Prokaryotic type
tRNA splicing ligases
ICJ70_10260
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Ins_allergen_rp
Motif
Other DBs
NCBI-ProteinID:
UNT57377
LinkDB
All DBs
Position
2051968..2053188
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AA seq
406 aa
AA seq
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MIEINGRFTNAKIFAQTALQTAVDQIQELTDQAFMAGTKVRIMPDYHAGKGCVIGTTIQL
QDRVVPNLVGIDVGCGVFVAQLDVTTVDFAQLDAIIRTYVPSGQDIHKEVSPSRHFVEFE
GKQFRASGLKEDYTNLSLGTLGGGNHFIELAKDEDDQHYLLIHTGSRYVGAKVANWHQKR
AYDNLRREDLTEKIEALKQQGRHQEIQSMIQAYKEQTPFVPKDLSYLEGEAFHDYIHDMK
IAQQFARMNRWTIAETIAKQMDWHFTDTFDTIHNYIDTETMTLRKGAVRANKGEKLVIPM
NMRDGSLICIGKGNAEWNYSAPHGAGRMFSRRAAKKALNMADFKDTMQGIWTTSVNEETL
DEAPMAYKPMTEITSAIGETVDIVKVIKPVYNFKASEAAKPFERKG
NT seq
1221 nt
NT seq
+upstream
nt +downstream
nt
ttgattgaaataaatggacgctttacgaatgctaaaatttttgcgcaaacagcattacaa
acagctgttgatcagattcaagaattaacagatcaggctttcatggcaggcactaaagta
cgtattatgccagattatcatgcaggtaagggatgtgtcattggcacgaccatccaattg
caagaccgtgttgtaccaaatcttgtaggcattgatgtggggtgtggtgtatttgtagca
caattagacgtaacgaccgttgattttgctcaactcgatgccatcattcgcacatatgta
ccaagtgggcaggatattcataaagaagtatcgccaagccgacattttgtggagtttgaa
gggaaacaatttcgagcaagtggcttgaaagaagactatacgaacttgtcattaggtaca
cttggaggaggcaaccattttattgaacttgccaaagatgaagatgatcagcactatttg
ctcatccatacggggtcacgatatgtaggggcaaaggttgctaattggcatcaaaaaaga
gcttatgataatttacgtcgagaagatttgacagagaaaatagaagcattgaaacagcaa
ggacgacatcaagagatccaatccatgatacaagcctataaagaacaaacaccgttcgtt
ccaaaagacttgtcatatttagagggggaagctttccatgattatatccatgatatgaag
attgcacagcaatttgcacggatgaatcgttggaccattgcagaaaccattgctaaacag
atggattggcattttacggatacgtttgatacgattcataactatatcgatacagaaacg
atgacgcttcgcaaaggggctgttcgtgcaaataaaggtgaaaagctagttattccaatg
aatatgcgggatggatctctgatttgtatagggaaaggcaatgcagaatggaattattca
gcccctcatggagcaggacgtatgttttcacgacgcgcagcgaaaaaagctttgaatatg
gccgattttaaagatacgatgcaggggatttggacaacatcagtcaatgaagaaaccttg
gatgaggcgccaatggcctataagccgatgaccgaaattacttctgcgattggggaaact
gtagatattgtcaaagtgattaaacctgtctataactttaaagcaagtgaagctgcaaag
ccatttgagcgaaagggttaa
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