Lysinibacillus capsici: ICJ70_19310
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Entry
ICJ70_19310 CDS
T08448
Symbol
topA
Name
(GenBank) type I DNA topoisomerase
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
lcap
Lysinibacillus capsici
Brite
KEGG Orthology (KO) [BR:
lcap00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
lcap03032
]
ICJ70_19310 (topA)
03400 DNA repair and recombination proteins [BR:
lcap03400
]
ICJ70_19310 (topA)
Enzymes [BR:
lcap01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
ICJ70_19310 (topA)
DNA replication proteins [BR:
lcap03032
]
Prokaryotic type
DNA Topoisomerases
ICJ70_19310 (topA)
DNA repair and recombination proteins [BR:
lcap03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
ICJ70_19310 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Zn_ribbon_Top1
Toprim
Toprim_4
Zn_ribbon_RPB9
Toprim_3
DUF2996
Toprim_2
Motif
Other DBs
NCBI-ProteinID:
UNT54638
LinkDB
All DBs
Position
complement(3783290..3785368)
Genome browser
AA seq
692 aa
AA seq
DB search
MADYLVIVESPAKAKTIERYLGKKYKVKASVGHVRDLPRSQMGVSAENNFEPKYITIRGK
GPVLQELKSAAKKVKKVYLAADPDREGEAIAWHLATALNIDIHSDCRVVFNEITKDAIIE
SFKNPRPINMDLVDAQQTRRILDRLVGYNISPILWKKVKKGLSAGRVQSVALRMIIDREN
EIKNFQPEEYWTIEGTFEKGKKSFDALYYGNGKDKIKLTNEAQVKAILKDVKGTNFDVVN
VTKKERKRNAAPAFTTSSLQQEAARKLNFRAKKTMMLAQQLYEGIDIGKKEGTVGLITYM
RTDSTRISDTAKAEAVTYIEGKYGKEYIATDIKQTKKASNAQDAHEAIRPTSTMRTPDEL
KTVLSRDQLRLYRLIWERFIASQMAPAVLDTVAVDLQNGDVLFRANGSQVKFAGFMKLYI
EGTDDQTEETTKLLPDMEIGDQVKSLEIEPKQHFTQPPPRYSEARLVKTMEELGIGRPST
YAPTLDTIQRRGYVVLDAKRFMPTELGEIVHQLVLEFFPDIINIEFTAQMEQDLDDIEEG
NRQWKKVVEEFYKDFEVHVKHADEAMEKVVIKDEPAGEDCELCGSPMVFKLGRYGKFMAC
SNFPDCRNTKAIMKPIGVKCPSCETGEIVERKSKTKRLFYGCNQYPECEFVSWDKPINRP
CPKCSALLVEKKIKKGVQIQCTKCDYEEAPTQ
NT seq
2079 nt
NT seq
+upstream
nt +downstream
nt
atggcggattatttagtgattgtagaatcaccagcaaaagcaaaaacaattgaacgttat
ttaggaaagaaatataaggtgaaagcgtcggttggacacgtacgggatcttccacgtagt
cagatgggcgttagcgcggaaaataatttcgagcctaaatatattacgatacgtggtaaa
ggacctgtgttacaggaattaaagtctgcagctaaaaaagtaaagaaagtttatctagcg
gccgatccagaccgcgagggagaagcaattgcttggcaccttgcgactgcattaaatatt
gatattcactcagattgtcgtgttgtatttaatgaaattactaaagatgcaattatagag
tcttttaaaaatccacgtccaattaacatggacttagtagatgcgcagcaaacaagacgt
atattggatcgacttgttggctataacattagcccaattctatggaaaaaggtgaaaaaa
ggtttatcagcaggtcgggtacaatctgtagcactacgtatgatcattgatcgtgaaaat
gaaattaaaaacttccaacctgaagaatattggacaattgaaggaacgtttgaaaaagga
aaaaaatcatttgatgccctttactatgggaatggtaaagacaaaataaaattaacaaat
gaagcacaagtaaaggcaatcttaaaagatgttaaaggaacaaactttgatgttgtcaat
gtaacgaaaaaggaacgtaagcgtaatgctgcaccagcctttacaacatcatctttacag
caagaagcagcacgaaaattaaatttccgtgctaaaaagaccatgatgctagctcagcaa
ttatacgaaggtatagatattggaaaaaaagaggggacagtcgggctaattacttatatg
cgtactgattccacacgtatttctgatacggcaaaagcagaagcggttacgtacattgag
ggcaaatatggaaaagaatacattgcaacagatataaaacaaacaaagaaagcttcaaat
gcacaggatgcgcacgaagcaatacgtccaacaagtacaatgcggacaccggatgaatta
aagacggtacttagccgtgatcagctacgcttatatcgcttaatttgggagcgctttatt
gcgagtcaaatggcaccagcagtacttgatactgtagctgtagatcttcaaaatggtgat
gttttattccgtgcaaatggctcacaagttaaattcgcaggctttatgaaactatatatt
gaaggtactgatgatcaaactgaagagacgacaaaacttttacctgatatggaaattggt
gatcaagtaaaatcgcttgaaatcgagcctaaacaacattttacacagccaccaccacgt
tattctgaggcgcgacttgttaaaacaatggaagaactaggaattgggcgcccgtccaca
tatgcaccgaccctcgatacaattcagcgccgtggctatgttgtattagatgctaaacgc
tttatgccaacagagctaggagagatcgtacaccaactcgtactagaatttttcccagat
atcataaacatcgaattcaccgcacaaatggaacaagatttagatgatattgaagaaggc
aatcgacaatggaaaaaagttgtggaagaattttataaggactttgaagtccatgtaaaa
catgcggatgaagctatggaaaaggttgtcattaaagatgagcctgcaggggaagactgt
gagctttgtggatctccaatggtctttaagcttggacgatatggcaaatttatggcttgt
tctaatttcccggattgtcgaaatacaaaagcgattatgaagcctattggtgtgaaatgc
ccttcctgtgaaacgggcgagattgtggagcgaaaaagtaaaacaaagcgtctattctat
ggttgcaatcagtatcctgaatgtgaatttgtctcatgggacaagccaattaatagacca
tgtccaaaatgtagtgcattattagtagagaaaaagataaaaaaaggtgtgcaaattcaa
tgtacgaagtgtgactatgaagaagcacctactcaatga
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