Lysinibacillus capsici: ICJ70_21560
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Entry
ICJ70_21560 CDS
T08448
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
lcap
Lysinibacillus capsici
Pathway
lcap03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lcap00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ICJ70_21560 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lcap03021
]
ICJ70_21560 (rho)
03019 Messenger RNA biogenesis [BR:
lcap03019
]
ICJ70_21560 (rho)
Transcription machinery [BR:
lcap03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
ICJ70_21560 (rho)
Messenger RNA biogenesis [BR:
lcap03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
ICJ70_21560 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
OB_RNB
S1CSD-TOTE-2
NACHT
ATPase_2
AAA
AAA_22
DUF3418
AAA_25
Spore_III_AA
AAA_24
Motif
Other DBs
NCBI-ProteinID:
UNT55065
LinkDB
All DBs
Position
complement(4278404..4279687)
Genome browser
AA seq
427 aa
AA seq
DB search
MSALTIAQLENMTLKELYALARQYKISYYSKLTKKELIFAILKTRSEQEGYFFMEGVLEI
VSQEGFGFLRPINYSPSKEDIYISASQIRRFDLRNGDKVSGKVRPPKENERYYGLLQVDA
VNGEDPEVAKERVHFPALTPLYPNRQIKLETTQRNLSTRIMDLVAPVGFGQRGLIVAPPK
AGKTSLLKEIANAITTNHPQAELIVLLIDERPEEVTDIERSVNADVVSSTFDEVPENHVK
VAEIVLERARRLVEHKRDVIILMDSITRLARAYNLVIPPSGRTLSGGIDPAAFHRPKRFF
GSARNIEEGGSLTILATALVDTGSRMDEVIYEEFKGTGNLELHLDRQLAERRIFPALDIR
RSGTRKEELLLEPEQLEKLWAIRKTFSDAPDFAERFLKKIRTTKSNEEFFEKLNEDMKKA
TKGKGLL
NT seq
1284 nt
NT seq
+upstream
nt +downstream
nt
atgtctgcattgacaatcgctcaattagaaaacatgacgttaaaagagctttacgccctt
gcacgccaatataaaatttcttattatagcaagctaacgaaaaaagaattgatatttgct
attttgaaaacgcgttcagagcaagagggctatttctttatggaaggcgtactagaaatt
gtttcgcaagagggcttcggcttccttcgaccaatcaactactcaccgagtaaagaagat
atttatatttctgcatcccaaatccgtcgctttgatttgcgtaatggggacaaggtttca
ggaaaggtgcgtccaccgaaggaaaatgagcgctattatggcctattacaagtagatgct
gtcaatggcgaagatcctgaagtagcgaaagaacgagttcatttcccagcactaacacct
ttatatccaaatagacaaattaaactagaaacaacacaacgcaatttatccacacgtata
atggatttagtggcacctgtaggctttggacaacgtggattaattgtagctcctccaaag
gcagggaaaacgtctttactaaaagagattgcaaacgctattacaaccaatcatccacaa
gcagagttaattgtcctactgattgatgaacgacctgaggaagtgacggatattgaacgt
tctgtcaatgcagatgttgtcagctcaacatttgatgaagtacctgagaatcacgtcaaa
gtggctgaaatagtattagaacgtgcgcgacgtttagtggaacataagcgtgatgtaatc
attttaatggactccattacacgtttagctcgtgcttataacttagtgattccaccgagt
ggacgtacactttctggtggtattgatcctgctgcgttccatagaccaaaacgtttcttt
ggttcagctcgtaatattgaagaaggcggtagtttaacaattttagcgacggctttagta
gatacaggatctcgtatggatgaagttatctatgaagaatttaagggaacagggaactta
gagcttcatcttgatcgtcagttagcagaacgccgtatattccctgcacttgacattcgt
cgttcgggtacacgtaaagaagagcttcttctggagccagaacaacttgaaaagctatgg
gcgattcgtaaaacattttctgatgcaccagattttgcagagcgcttcctgaaaaaaata
cgtacaacaaaatcaaatgaagaattttttgaaaagctaaatgaagatatgaaaaaagca
acaaagggtaagggacttttataa
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