Lysinibacillus capsici: ICJ70_24110
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Entry
ICJ70_24110 CDS
T08448
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
lcap
Lysinibacillus capsici
Pathway
lcap03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
lcap00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
ICJ70_24110 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lcap03400
]
ICJ70_24110 (mfd)
Enzymes [BR:
lcap01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
ICJ70_24110 (mfd)
DNA repair and recombination proteins [BR:
lcap03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
ICJ70_24110 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrB_inter
DEAD
TRCF
CarD_TRCF_RID
Helicase_C
ResIII
Cas3-like_C_2
RecG_dom3_C
MFD_D3
AAA_22
ISP_coupler
IstB_IS21
Motif
Other DBs
NCBI-ProteinID:
UNT55508
LinkDB
All DBs
Position
complement(4804502..4808014)
Genome browser
AA seq
1170 aa
AA seq
DB search
MEVLRQLVSQDKHITSFLKEIQSGQTASQLITGLTGSARPVMVDVLFEYVKKPIYIISPN
LLQAQKMADELVGLLGEEHVHYYPADEFIAADLSVASPELRAERIATLDCLARGEKAVYV
IPVAGLRKIMQPKEHWLHYFLQTALGEDVEIDKWLQTLVEMGYVRNSMVTSPGEFALRGG
ILDIYPPYLESPIRIELFDTEVDSIRTFSADDQRSIDKLQKIRILPASEVILTKSERQAL
ADRLEVALAASLKKVKKQETKELLYQHIQYDIELLQQGNLPDYVNKYGSLLYDKTAFLGD
YFEHDGIVLFDELGRIQEVMDAWEREEDEWFLSLIEEGKMVHDVKPAFSLKEILAMLSQQ
KLSFSLFSRTFAGITFSKTTNFSCKPMQQFHGQMSLLQSEVERWLLGKFTVLIIARDKER
VKRVQQMLEEYDIHTTIGEPTEPGIYIVDGGLSSGFELPLQRLAIVTEDELFKQQVKKKT
RTQKMTNAERIKSYTEIKPGDYVVHVHHGIGKYIGVETLEVNGTHKDYLHIRYRADDKLY
VPVEQIDLIQKYVASEDREPKLHKLGGAEWKKAKAKVSSAVQDIADDLIKLYAKREAEKG
HAFTPDNDDQRNFEAMFPYEETEDQLRSIVEVKRDMERERPMDRLVCGDVGYGKTEVAIR
AAFKAIQDGKQVAFLVPTTILAQQHYETIRERFQDFAINVGLLSRFRSKKEQTATLKGLK
EGRVDIVIGTHRILSKDLIFQDLGLLIVDEEQRFGVTHKEKIKQLKTNVDVLTLTATPIP
RTLHMSMVGVRDLSVIETPPANRFPVQTYVMEHSGALVREAIEREMARGGQVFYLYNRVE
DMARRVEEIQVLVPEARIGFAHGKMTESELESVILAFLEGDYDVLVTTTIIETGVDIPNV
NTLIVHDADRMGLAQLYQLRGRVGRSNRVAYAYFMYQRDKVLTDVAEQRLQAIKEFTELG
SGFKIAMRDLSIRGAGNLLGAQQHGFIDSVGFDLYSQMLQDAIAERQTGVKKEEKPDIEI
LLSIDAYIPDAYIPDGYQKIQMYKRIKAMDQVEEYDEIREELEDRFGDLPIETERLLRIA
RMKVWGLGAGVVSVKEKQKLITILLSERGTASVDGSKIIEESMKFERAVGFGMDGMQLKL
TIDERKIGKYQPFDMLEELMQIIDNAKKQQ
NT seq
3513 nt
NT seq
+upstream
nt +downstream
nt
gtggaggttttacgacagcttgtgtcgcaagataaacatattacatcatttttaaaggaa
attcagagcggtcaaactgcatcacagcttataacaggtttaacaggaagcgcacgccca
gtaatggttgatgtgttatttgaatatgtaaagaagccaatctacattatctctcctaat
ctattgcaggcacaaaaaatggcggatgagcttgttggactattaggcgaggaacatgtt
cactattaccctgcggatgaatttattgcagccgatctttctgtggcttcaccagaactt
cgcgcggagcgaatcgcgacgctcgattgcttagctagaggtgagaaagccgtatatgta
atacctgtggctggtctacgtaaaataatgcaaccaaaagaacactggctacactatttt
ttacaaaccgcattaggcgaagatgttgaaattgataaatggttgcaaacattagttgag
atgggctatgtacggaattcaatggtgacatcacctggagagttcgcattacgtggagga
attttagatatttatccaccttatttagaatcaccaattcgtattgaattatttgataca
gaggttgactccatacgaacattttcagcagatgaccaacgttctattgataaattacaa
aaaattcgtattctccctgcttcagaggtcattcttacaaaatcagaaagacaggcatta
gcagaccgtttagaagtggcattagcagccagcctaaagaaggttaaaaagcaggagaca
aaagaacttctgtatcagcatattcaatatgatattgagttgctacaacaagggaattta
cctgattatgtaaacaagtatggctcattattatacgataaaacagcctttttaggagat
tactttgaacatgatggtattgtactttttgacgagcttggacgtattcaagaggtaatg
gatgcatgggagcgtgaagaagatgagtggtttttatctttaatcgaagagggaaaaatg
gttcacgatgtcaaacctgccttctcattaaaagaaatattggctatgttgtcacaacaa
aagctttcattttcattgttttcgcgaacatttgcagggattacgtttagtaaaacaacc
aacttttcttgcaagccaatgcagcaatttcatggacaaatgtccttgcttcaaagtgag
gttgaacgctggttactaggcaaatttacagttctcatcatagcaagggataaagaacga
gtgaaaagagttcagcaaatgcttgaagaatacgatattcatacaacaataggtgagcca
acagaacctggtatttatattgtagatggtggcttgtcgagtggctttgaattgccccta
cagcgtttagcaattgtaacagaagacgagctctttaaacagcaggtaaagaaaaaaaca
cgcacacaaaaaatgaccaatgctgaacgtattaaaagttatacggaaattaagccaggt
gattatgttgtacatgttcatcatgggattggtaaatatattggagtagagacattagag
gttaatggtacacataaggattatctgcatattcgatatcgtgcagacgataaattatat
gtacctgttgagcaaatagacttaatccaaaaatatgtggcgtcagaggatcgagaacca
aagctacataaattaggtggagcagagtggaaaaaggcgaaagcgaaggtatcctctgct
gtacaggatattgcggatgatttaataaagctgtatgcaaagcgtgaagcagagaaaggg
catgcttttacacctgataacgatgaccagcgtaattttgaagcaatgttcccctatgaa
gaaacagaagatcaactacgttcaattgttgaagtaaaacgagatatggaacgtgaacgc
cctatggaccgtttagtctgtggtgatgtaggctatggtaaaacagaggtagccattcgt
gccgcatttaaggctattcaagatggaaagcaagtggcattccttgtccctacaaccatt
ctagcccagcaacattatgagactattcgtgagcgctttcaggactttgccattaatgtt
ggattgttatctcgcttccgttcgaaaaaggagcaaacagcaacattaaaaggcttaaaa
gagggccgagtcgatatagttattggaacacaccgtattttatctaaagatttaattttc
caagaccttggtctgctaattgtggatgaagagcaacgttttggtgtgacgcataaggaa
aaaattaagcagttaaagacaaatgtcgatgtcttaactttaacagctacaccaatccca
aggacacttcatatgtccatggtaggggtccgagatttatctgttattgagacgcctcct
gctaatcgtttcccagttcaaacatatgtgatggagcacagcggtgcattagtacgagaa
gctattgagagggaaatggcacgtggcggacaagtattttatttgtataatcgggtagag
gatatggctcgaagggttgaggagattcaagtgctggtccctgaagcacggataggcttt
gctcatggaaaaatgactgagtcagagctagaatcagtgattttagcctttttagagggc
gactatgatgtgcttgttacgacaacgattatcgagacaggtgtcgatataccgaatgta
aatacattaatagtccatgatgctgatcgcatgggcttagcccagctctaccaattacgc
gggcgcgttggacgttctaacagagtagcctatgcatattttatgtaccaacgcgacaaa
gttctgacagatgtagcggagcaacgtttacaagcaattaaagaatttacagagcttggc
tcaggctttaaaattgcgatgcgagatttatctattcggggcgcaggaaacttacttgga
gcgcagcaacatggctttattgattcagttggctttgatttatattcacaaatgcttcag
gatgccatcgcggaacgtcaaacaggcgtgaaaaaagaagaaaagccagatattgaaatt
ttgctgagtattgatgcctatattccagacgcttatattccagatggttatcaaaagatc
caaatgtataaacgaattaaagccatggatcaggtggaggagtatgacgaaatcagggag
gaattagaggatcgatttggcgatcttccaattgaaacagagcgtttacttcgaatagca
cgaatgaaagtttggggcttaggtgcgggagtagtatctgtaaaggagaagcaaaaactt
attacaatactattatcagaacgagggacggcaagtgtcgatggcagtaagattattgaa
gaatcgatgaaattcgagcgtgctgttggttttggtatggatggcatgcagttaaaatta
acaatagatgaacgcaagattgggaaatatcaaccctttgatatgttggaagaactaatg
caaattattgataatgcaaaaaagcagcaatag
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