Pseudolactococcus carnosus: BHS00_00025
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Entry
BHS00_00025 CDS
T07226
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
lcar
Pseudolactococcus carnosus
Pathway
lcar03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
lcar00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
BHS00_00025
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lcar03400
]
BHS00_00025
Enzymes [BR:
lcar01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
BHS00_00025
DNA repair and recombination proteins [BR:
lcar03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
BHS00_00025
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
TRCF
Helicase_C
CarD_TRCF_RID
ResIII
Cas3-like_C_2
MFD_D3
AAA_16
AAA_22
RecG_dom3_C
TniB
CdvA
Motif
Other DBs
NCBI-ProteinID:
QDJ25092
LinkDB
All DBs
Position
complement(9834..13334)
Genome browser
AA seq
1166 aa
AA seq
DB search
MKLTTLFDENLPVNKWHRDLNKASRTLFTGIQGTIKALLMATAYDNYPDKYIIITDSQYH
ASELYSDLAEIIGEDKIFQYFSDDNIFAEYAIASKERIAYRLDALTFLQDEQADGFLIIP
IFALRNLLPNPKTFKNFKLTFTVGQELDVEAIAKQLSTRSFDLVQRVMSPGEFSKRGDIL
DIYPLTAENPIRIEFFGDEIDGIRYFDIETQRSLQEVNTVTITPASDFVLSQDDFARGVN
NLSSIPDLNEQQKSYFDELIGAAKHDHYHPDLRKFSEFFYEDKWTLLDYFPKNTPLFIDD
FQKITEMDHKITHETAEFSLSEKILNRSIDGMIYLSDTIHSLRQYKPATFFSNFQKGLGN
LKFDQLHNFNQHTIQSFFGQIQLLKVEVEHLTKINYTVILAVSKEKQGKLIDSLQDVDVA
FTLSSLQAIQENKVNIVNINLANGFNLLEEKIVLITENEIFGKNKKRRTKRLNITNAERL
KDYNELAVGDFVVHQTHGIGKYLGLETIEIANIHRDYLTIQYQNNDTISIPVDQVDLLTK
YAAGEGKPPKVNKLNDGRWKRTVKTVSKQIEDISADLIKLYAARESQKGFAFAPDDASQQ
EFDDAFSYTETEDQLRSVKEIKQDMERVRPMDRLLVGDVGFGKTEVAMRAAFKAINDHKQ
VAILVPTTVLAEQHYNNFRERFNDFGVNVAVMSRFQTKKEQTEILEKLKKDRVDLLIGTH
RLLSKDVVFFDLGLMIIDEEQRFGVKHKERLKELKTQVDVLTLTATPIPRTLHMSMMGIR
DLSVIETPPTNRYPVQTYVMETNFGVLRDAVLREISRGGQVFYIYNRVDTIEQKVSQISE
LIPEARVSYIHGQMSEVQLENTLLEFINGEYDVLVATTIIETGVDIPNANTLFVEDADRM
GLSQLYQLRGRVGRSNRVAYAYFMYQPDKSLTDVSEKRLEAIKGFTELGSGFKIAMRDLS
IRGSGNILGAEQSGFIDSIGFDLYAQLLEEAVNKRLGKTKKTTKSSSEISLGIDAFLPTD
YISDQRQKIEIYKRIREIESRVYYQDLQDELIDRFGEYPDTVAYLLEIGLLKCFADHALV
DKIERQLVNITYTMSKAANHQFMPQDYFDALSKTTLKAKIGEEKGLMIIRFDIRQVSEAA
YLAQIMAFTERLNRIRDEKTNEKTID
NT seq
3501 nt
NT seq
+upstream
nt +downstream
nt
atgaaacttacaactctatttgatgagaatctaccagtaaataaatggcatcgtgatcta
aataaggcatcacgtaccttattcactggtattcaaggtacgatcaaagcactgttgatg
gctacagcatatgataactaccctgataaatacattatcatcacagatagtcaatatcac
gctagtgaactctatagtgatctagcagagatcattggtgaagacaagatcttccaatat
ttctctgatgataatatttttgcagaatatgcaattgccagtaaagaaagaatcgcttat
cggctagatgcccttactttcttacaggatgaacaagcggatggttttttaatcataccg
atttttgctttacgcaatttattaccgaatccaaaaacatttaagaatttcaagttgaca
tttacagtcggtcaagagcttgatgttgaggcaattgccaagcaattatcaacacgctct
tttgaccttgtccaacgtgtgatgagccctggagagttttcaaaacgcggtgatatttta
gatatttatcctttaactgccgaaaatccgattagaatagagttttttggtgatgaaatc
gatggaattcgctactttgatatagaaacacaacgctctttacaagaagtaaatacagta
acgattacaccagcatctgactttgtcctaagtcaagatgactttgcacgtggtgtcaat
aacctctcaagtataccagatttaaatgagcaacaaaaatcttattttgatgaactcatt
ggtgctgccaaacatgaccactatcatcctgatttaagaaaatttagcgaatttttttat
gaagacaaatggacattactagattattttccgaaaaatacgccactatttatcgatgat
tttcaaaaaataactgaaatggatcataaaatcacacacgagacagccgagttcagttta
tctgaaaagatacttaatcggtctattgatggtatgatttacttatctgatacaattcat
agtttaaggcagtataagccagcaacttttttctcaaattttcaaaaagggctaggcaac
ttaaaatttgatcaattacataattttaatcagcatacaatccaatctttctttggccaa
atacaactactaaaagttgaagtagagcatttaactaaaattaactatacagtaatcctt
gccgtttcaaaagagaagcaaggtaagttgatagatagtttacaagatgttgacgtggct
tttacactatcctcactgcaagcaattcaggaaaacaaagtcaacatcgtcaatataaat
ttggcaaatggctttaatctacttgaagaaaaaattgtgctcattacagaaaatgagatt
ttcggtaaaaataaaaaaagacgaaccaaaagacttaacattacaaatgcagaacgactt
aaagactataatgagttagccgttggcgattttgtcgtccatcaaactcatggtatcggt
aagtacttaggtcttgagacgattgaaattgctaatatacatcgggattacttaacgatt
caataccaaaataatgatacaatctctattccggttgaccaagtcgatttactaactaag
tatgctgctggtgaaggaaaaccacctaaagtcaacaaactgaatgatggtagatggaaa
cgaactgtcaaaactgtcagcaaacaaattgaagatatctcagctgatttaatcaaactc
tatgcagctagagaaagtcaaaaaggatttgcttttgcccctgatgatgctagtcagcaa
gaatttgatgacgccttttcatatactgaaacagaggaccaactacgctctgtcaaagaa
atcaaacaagacatggaaagagtccgtcccatggacagattgttagtcggtgatgtgggg
tttggtaaaacagaagttgccatgcgtgctgcctttaaggcaataaatgatcacaagcaa
gttgccattttagtccctacaacggtcctagcagagcaacactacaataatttccgagag
cgattcaatgattttggtgtaaacgttgctgtgatgtctcgttttcaaacaaaaaaagaa
caaactgaaatactcgaaaaattaaaaaaagaccgtgttgatttactcattggtacacac
cgtctcctatctaaagacgtcgtctttttcgatttaggcttaatgatcatcgatgaggaa
caaaggtttggtgtcaaacataaggaaagacttaaggagcttaaaacccaagttgacgtc
ttaacattaacagctacaccgattccccggaccctacatatgtcgatgatggggattcga
gacctatcagtcattgaaaccccccctactaatcgttatcctgtacagacctacgtgatg
gagacaaattttggtgtactaagagatgctgttttaagagaaatatcacgtggcggacaa
gttttctatatttacaaccgtgttgacacaatagaacaaaaagtatcccagatttcagaa
ctgattcccgaagcacgtgttagctatatacatggtcaaatgagtgaagtacagttagag
aataccttgcttgagtttataaatggcgaatacgatgttctggttgcgacaacaattatt
gaaactggtgtggacatcccaaatgccaatacgctatttgtagaggatgctgatcgaatg
ggactttctcagctctaccaactgcgagggcgtgttggccgttctaatcgtgtcgcctat
gcctatttcatgtaccaacctgataaatcactgactgatgtttctgaaaaaagactagag
gcgattaagggatttactgagttaggatctggttttaaaattgccatgcgtgatttatct
attcgtggatccggtaacattttgggtgctgaacaatccggctttattgattcaattggc
tttgatttgtatgcgcaactattagaagaagcagtcaataaacgtcttggtaaaacaaag
aaaacaacaaaatcaagttctgaaatatcgcttggaattgatgccttcttaccgacagac
tatatttctgatcaacgacaaaaaatagaaatttataagcgtattagagaaatagagagc
cgcgtctactatcaagatttacaagatgagttaatcgatcgttttggtgaatatcctgat
actgttgcttatttattagaaattggtctgttaaaatgttttgctgatcatgcattagtt
gacaaaatagagcgacaacttgtcaatatcacgtatacgatgagtaaagcagccaatcat
cagtttatgccacaggattattttgatgccctctccaagacaactctaaaagctaaaatt
ggcgaagaaaaaggcttgatgattattcgttttgatattagacaggtatcagaagcagct
tatcttgcacaaattatggcctttacagagcgcttaaatcgtattagagatgagaaaaca
aatgaaaagaccattgattaa
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integrated database retrieval system
