Lactococcus carnosus: BHS00_00940
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Entry
BHS00_00940 CDS
T07226
Name
(GenBank) DNA-formamidopyrimidine glycosylase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
lcar
Lactococcus carnosus
Pathway
lcar03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
lcar00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
BHS00_00940
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lcar03400
]
BHS00_00940
Enzymes [BR:
lcar01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
BHS00_00940
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
BHS00_00940
DNA repair and recombination proteins [BR:
lcar03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
BHS00_00940
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fapy_DNA_glyco
H2TH
zf-FPG_IleRS
zinc-ribbons_6
NFACT_N
DZR
Auto_anti-p27
zf-dskA_traR
HscB_4_cys
Motif
Other DBs
NCBI-ProteinID:
QDJ25237
UniProt:
A0A7L4W5C8
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All DBs
Position
186696..187529
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AA seq
277 aa
AA seq
DB search
MPELPEVETVRRGLNKLVSGQKIISVALNYNRMIQSDLSEFLAYLPGKTILTVSRRGKYL
LFELGDKTLISHLRMEGKYQLFPSEAVPDNHHFHAFFALSNGQTLVYQDVRKFGTMELVD
QGKLLAFFGGKKIGPEPIASEFTLAPFQEKLVKSTKKIKPYLLDQTLVAGLGNIYVDEVL
WLSKIHPSEIARNLSKKQIADLRQAIISVLDEGVKRGGSTIRSYKNALGMAGTMQDSLKV
YAKKDQPCQRCGRPIEKYKLAGRGTHFCPHCQHLKKG
NT seq
834 nt
NT seq
+upstream
nt +downstream
nt
atgccagaattaccagaagtggaaaccgttcgtcgagggcttaataagcttgttagcggt
caaaaaataatctctgtagcgcttaactataaccggatgatccagtcggatctatcagaa
tttttggcttatcttccaggcaagacgattttgactgttagccgtcgtggcaagtattta
ttgtttgagctaggggataagacattgatcagtcatctgagaatggaaggcaagtaccaa
cttttcccaagtgaagcggtacctgataatcatcattttcatgcttttttcgcgctatca
aatggtcagaccttagtttatcaagatgttagaaaatttggtacgatggagctggttgat
cagggcaagctgcttgcttttttcgggggtaaaaaaattgggccagaacccatagcatca
gagtttaccttagcaccttttcaagaaaaacttgtcaagagtacaaaaaaaattaaaccg
tatttactagatcaaaccttagtagcaggactaggcaatatttatgttgatgaggtacta
tggttatctaaaatccatccatcagaaattgcgagaaatttatcgaagaaacaaattgca
gatttgagacaagccatcatttcagtactagatgaaggtgtcaagcgaggcgggtctact
attcggagctataaaaatgctttggggatggctggtaccatgcaagacagtctgaaagtg
tatgcaaagaaagatcagccttgtcaaagatgtggtagaccaatcgaaaaatataaactt
gcggggcgtggcacgcacttttgtccacactgtcagcatctaaaaaaaggttga
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