Pseudolactococcus carnosus: BHS00_03155
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Entry
BHS00_03155 CDS
T07226
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
lcar
Pseudolactococcus carnosus
Pathway
lcar02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
lcar00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
BHS00_03155
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lcar03021
]
BHS00_03155
Transcription machinery [BR:
lcar03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
BHS00_03155
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
Sigma70_r1_1
Nitro_FeMo-Co
DBD_HTH
Motif
Other DBs
NCBI-ProteinID:
QDJ26955
LinkDB
All DBs
Position
642545..643666
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AA seq
373 aa
AA seq
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MTKNNKKIGSAFNVATAEFIRDHKSLGQAVDDDITTELVTEFELDTDGIEALLTKIQDAG
ISIIDKNGEPSVMALESSKVEVKEAKEEIEEIVTNVRIDDPVRMYLKEIGRFPLLTFDEE
TKLAEAIVEGGEGGEMAKQMLAEANLRLVVSIAKRYSGRGMQFLDLIQEGNMGLMKAVDK
FDHTKGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRIQRQLLQDLGRDP
SPEEIGAEMDIKAERVREILKIAQEPVSLETPIGEEDDSHLGDFIEDDAIESPVDYTNRV
MLREQLDEVMDTLTDREENVLRMRFGLDDGRMHTLEDVGKQFKVTRERIRQIEAKALKKL
RHPRRSKQLRDFM
NT seq
1122 nt
NT seq
+upstream
nt +downstream
nt
ataactaaaaataacaaaaaaattggttcagcatttaatgttgcgacagctgaatttatt
cgggaccataagagtttaggtcaagcagttgatgatgatatcacgactgagcttgttact
gaatttgaattagatacagatggtattgaagcactgcttacaaaaattcaagatgcaggc
atctctatcattgataagaacggtgaaccgtctgtaatggcgcttgagtcgtcaaaagtt
gaagtaaaagaagctaaagaagaaattgaagagatcgtgacaaatgttcggatagatgat
ccagttcggatgtatttaaaagaaatcggtcgcttccccttgcttacttttgatgaggag
acaaaattagctgaggccatcgtcgaaggtggtgaaggtggagaaatggctaagcaaatg
cttgctgaagccaatcttcgtcttgttgtctctattgccaaacgttattcaggccgtggc
atgcagtttcttgatttgattcaagaaggcaatatgggcttgatgaaagctgttgacaaa
tttgaccatacaaaaggcttcaaattttcaacttatgccacgtggtggattcgtcaagca
atcacacgtgccatagctgaccaagcacgcacgattcgtattcctgtccacatggttgaa
acaatcaataaattgattcggattcaacgccaactcttacaagatttgggacgtgatcca
tcaccagaagaaattggtgctgaaatggatattaaggctgaacgtgttagagaaattttg
aaaatcgcacaagagcctgtatcattggaaacaccgattggtgaggaagatgattcgcat
cttggagatttcatcgaggatgatgcgattgagagtccagttgactataccaaccgtgtg
atgctccgtgaacagctagatgaagtcatggataccctaactgaccgtgaagaaaacgtc
cttcggatgcgctttggtctagatgatggcagaatgcacacacttgaagatgttggtaaa
caatttaaagtgactcgtgaacgtatccgtcaaattgaagcaaaggccttaaagaaattg
cgtcatccaagacgtagtaagcaattaagagacttcatgtaa
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