Pseudolactococcus carnosus: BHS00_08145
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Entry
BHS00_08145 CDS
T07226
Name
(GenBank) ATP-dependent RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
lcar
Pseudolactococcus carnosus
Pathway
lcar03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lcar00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BHS00_08145
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lcar03019
]
BHS00_08145
03009 Ribosome biogenesis [BR:
lcar03009
]
BHS00_08145
Enzymes [BR:
lcar01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
BHS00_08145
Messenger RNA biogenesis [BR:
lcar03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
BHS00_08145
Ribosome biogenesis [BR:
lcar03009
]
Prokaryotic type
rRNA helicases
BHS00_08145
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
GRP
Arginosuc_synth
Motif
Other DBs
NCBI-ProteinID:
QDJ26518
LinkDB
All DBs
Position
complement(1711528..1713108)
Genome browser
AA seq
526 aa
AA seq
DB search
MKFTELGLSEDILSAVNKAGYETPTPIQEQTIMLALDGKDVIGQAQTGTGKTAAFGLPTL
DKIDINGGLQALVIAPTRELAVQSQEELFRFGRDKGVKVRSVFGGASIDKQIKALKSGAH
VVVGTPGRMVDLIKRRALQLGDIETLILDEADEMLNMGFIDDLEFIIKATPTATRQTLLF
SATMPDAIKKIGVKFMKEPQHVKIVSKEMTSDLIDQYYVKAKEFEKFDVLTRLIDVQKPE
LAIIFGRTKRRVDEITRGLKLLGYRAEGIHGDLAQQKRLAVLRDFKNDNLDVLVATDVAA
RGLDISGVTHVYNYDITQDQESYVHRIGRTGRAGKSGVSITFVSNNEMGYLRAIERLTKK
EMKGMKPPTREEAYQASLAVAFDEIKRDLTDEKISAKLNKFDEDADKLLAEYDAKLLVSL
LLQAKVSDPDTRPKVDIAPEKPLPFNGEGGKGGGGGRGGNRGGGGSRGRNDRRGGGGGFN
RDKRSGGGRDRDDRNKKDYYKKDKQKVHPHATEKKPGFVIRNKGDK
NT seq
1581 nt
NT seq
+upstream
nt +downstream
nt
ttgaaatttacagaacttggtttatcagaagacatcttatcagcagtaaataaagctggt
tacgaaacaccaacacctatccaagaacaaacaatcatgcttgccttagatggtaaagac
gtgattggtcaagcccaaactggtactggtaagacagcagcctttggtctaccgacactt
gataaaattgatatcaatggtggcttacaagcgttggttattgcaccaactcgtgagcta
gctgttcaatctcaagaagaattgttccgatttggccgtgacaaaggcgttaaagtacgt
tcagtctttggtggtgcgagtattgataaacaaattaaagcacttaaatctggtgcgcat
gtcgttgttggtacaccaggacgtatggttgacttaatcaaacgtcgtgccttgcaactt
ggggatatcgaaacattaatccttgatgaagcagatgaaatgcttaacatgggctttatc
gatgaccttgagttcatcatcaaagcaacaccaacagcaacacgtcaaacactcttgttc
tcagcaacgatgcctgatgcaatcaagaaaatcggcgtgaaattcatgaaagaaccacaa
cacgttaaaatcgtatcaaaagaaatgacttctgatttgattgatcaatactacgtgaaa
gcaaaagaatttgaaaaatttgatgttttaacacgtttaatcgacgtacaaaaaccagaa
ttagcaatcatctttggtcgtacaaaacgtcgtgttgatgaaattacacgtgggttaaaa
cttctcggctaccgtgctgaaggtatccatggcgatttagcacaacaaaaacgtttagca
gtattgcgtgactttaaaaatgataatttagatgtactcgttgcgactgacgttgcagcg
cgtggtcttgatatctcaggcgtaacacacgtttataactacgatatcacacaagatcaa
gaatcatacgttcaccgtatcggccgtactggtcgtgctggtaaatcaggtgtatctatt
acgtttgtatctaacaacgaaatgggttacctacgtgcgattgaacgtttgactaagaaa
gaaatgaaaggcatgaagccaccaacacgtgaagaagcttaccaagctagcctcgctgtt
gctttcgatgaaatcaaacgtgatttaactgatgaaaaaatttcagctaaattgaacaaa
tttgatgaagatgctgataaattactagctgaatacgatgctaaactattagtttcattg
ttacttcaagctaaagtcagtgatcctgatacacgtcctaaagttgatatcgcacctgaa
aaaccattaccatttaacggtgagggtggcaaaggcggcggcggaggccgtggtggtaat
cgtggcggcggcggtagtcgtggtcgtaatgatcgtcgtggcggcggtggcggttttaac
cgtgacaaacgcagcggtggtggtcgcgatcgtgatgaccgtaacaaaaaagattattac
aaaaaagataaacaaaaagtgcatcctcatgcgactgaaaagaaacctggtttcgttatt
cgcaacaagggtgataagtaa
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