Noviluteimonas caseinilytica: LYSCAS_02120
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Entry
LYSCAS_02120 CDS
T07541
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
lcas
Noviluteimonas caseinilytica
Brite
KEGG Orthology (KO) [BR:
lcas00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
lcas03009
]
LYSCAS_02120 (rlmD)
Enzymes [BR:
lcas01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
LYSCAS_02120 (rlmD)
Ribosome biogenesis [BR:
lcas03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
LYSCAS_02120 (rlmD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
Methyltransf_31
Methyltransf_25
PCMT
MTS
RrnaAD
TRM5-TYW2_MTfase
Cons_hypoth95
TRAM
Methyltransf_15
Methyltransf_11
Methyltr_RsmB-F
Methyltransf_23
UPF0020
Methyltransf_12
PrmA
CMAS
Ubie_methyltran
Motif
Other DBs
NCBI-ProteinID:
BCT91188
LinkDB
All DBs
Position
complement(207421..208755)
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AA seq
444 aa
AA seq
DB search
MARIDQTPFTIDIVDQTHDGRGVARRADPKVPGAGKAVFVSGALPGETVVAQLTQRHRSF
DEARTLEVLSASPDRVTPRCPHFGTCGGCALQHLDEGKQIHAKQRVLLDNLERIGHVTPQ
TVLEPLVDAAWGYRRKGRFSVRRVDKKDKTLVGFREQDGRFVADLSECHTVMPQIGMKIA
ALSALIDGLDARAQVPQVEFIAGDDTVALVFRHMMPLSECDLAALTAFAQAHDFAIFLQP
GGIDSVHALWPHAPKLAFTLPAWDIELQFRPLDFIQVNAGLNQKMIARTLDLLDVQAGDR
VLDLFCGLGNFTLPLARVANEVVGVEGDAGLIRRARENATHNHLDNVDFHAADLAQDLSA
HAWMRAGFDRLLLDPPRSGADVVLKQLPLGGLKRIVYVSCHPASLARDAGYLVNERGWKL
RAAGVMDMFPHTAHVESIAMFEPR
NT seq
1335 nt
NT seq
+upstream
nt +downstream
nt
ttggcccgcatcgaccagacccctttcacgatcgacatcgtcgatcagacccacgacggc
cgcggtgtcgcgcgccgcgcagatcccaaggtccccggcgccggcaaggccgtgttcgtg
tccggcgcgctgccgggcgaaaccgtggtggcgcagctcacgcagcgccatcgcagcttc
gacgaagccaggaccctggaagtcctctccgcctcgcccgaccgcgtgaccccgcgctgc
ccgcacttcggcacctgcggcggctgcgcgctccagcacctcgacgaaggcaagcaaatc
cacgccaagcaacgcgtgctgctggacaacctcgaacgcatcggccacgtcacgccgcag
accgtgctcgaacccctcgtcgatgccgcgtggggctatcgccgcaagggccgcttctcc
gtgcgtcgcgtcgacaagaaggacaagacgctcgtcggcttccgcgaacaggacgggcgc
ttcgtcgccgacctgtcggaatgccacacggtgatgccgcagatcggcatgaagatcgcc
gcgttgtcggcgctgatcgacggcctcgatgcgcgcgcccaggtgccgcaggtggaattc
atcgcgggcgacgacaccgtggcgctcgtgttccgccacatgatgccgttgtccgagtgc
gaccttgccgcgctcaccgcgttcgcgcaggcgcacgacttcgcgatcttcctgcagccc
ggcggcatcgattcggtgcacgcgttgtggccgcatgcgccgaagctcgcgttcacgctg
ccggcgtgggacatcgaactccagttccgcccgctcgacttcatccaggtcaacgccggg
ctcaaccagaagatgatcgcgcgcacgctcgacctgctcgacgtgcaagccggcgatcgc
gtgctcgacctgttctgcggcctcggcaatttcacgctgccgctggcgcgcgtggcgaac
gaagtcgtgggcgtggaaggcgacgccggcctcatccgccgcgcacgcgagaacgccacg
cacaaccacctggacaacgtggacttccacgccgccgacctcgcgcaggacctgtccgcg
cacgcctggatgcgcgccggcttcgaccgcctgctgctcgacccgccgcgctcgggcgcc
gacgtggtgctcaagcaactgccgctgggcggcctgaagcgcatcgtctacgtgagctgc
cacccggcctcgctggcgcgcgacgccgggtacctcgtgaacgagcgcggctggaagctg
cgcgcggccggcgtgatggacatgttcccccataccgcgcatgtggaaagcatcgcgatg
ttcgaaccgcgctga
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