Noviluteimonas caseinilytica: LYSCAS_05090
Help
Entry
LYSCAS_05090 CDS
T07541
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
lcas
Noviluteimonas caseinilytica
Pathway
lcas03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
lcas00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
LYSCAS_05090 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lcas03021
]
LYSCAS_05090 (rpoC)
03400 DNA repair and recombination proteins [BR:
lcas03400
]
LYSCAS_05090 (rpoC)
Enzymes [BR:
lcas01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
LYSCAS_05090 (rpoC)
Transcription machinery [BR:
lcas03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
LYSCAS_05090 (rpoC)
DNA repair and recombination proteins [BR:
lcas03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
LYSCAS_05090 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
Motif
Other DBs
NCBI-ProteinID:
BCT91485
LinkDB
All DBs
Position
complement(509730..513953)
Genome browser
AA seq
1407 aa
AA seq
DB search
MKDLLNLFNQQRPMPDFDAIKIALASPDLIRSWSYGEVKKPETINYRTFKPERDGLFCAA
IFGPIKDYECLCGKYKRMKHRGVVCEKCGTEVTLAKVRRERMGHIDLASPVAHIWFLKSL
PSRIGLMLDMTLRDIERILYFEAYVVTEPGLTPLERGNLLTEEQFMQARQEHGDDFDAAM
GAEAVYELLRTIDLQSEMLRLKEEIAATNSETKLKRLTKRIKLIEAFLDSGNRPEWMVMT
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLELNAPDIIVRNEKRMLQ
ESVDALMDNGRRGRAITGTNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVIVVGPT
LRLHECGLPKKMALELFKPFIFAKLQRRGLATTIKAAKKLVEREEAEVWDILEEVIREHP
VLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCTAFNADFDGDQMAVHVPLSLEAQLEA
RALMMASNNILSPANGEPIIVPSQDVVLGLYYMTRALENKKGEGMAFANVAEVKRAYDNR
VVEIHAKVKVRITETVVAEDGSRSKKTSIVDTTVGRSLLQEILPEGLPYQLANTELTKKN
ISRLINSCYRMLGLKDTVVFADKLMYTGFAYATRAGVSIGIDDMIIPGEKKGILDEAEAE
VLEIQQQYQSGLVTAGERYNKVVDIWSRTNERVAKAMMDAIGTDTVLNAKGERVPQKSMN
SIYIMADSGARGSQAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVAQDVVITETDCGTFDGLTMTPIVEGGDVVEPLRDRVL
GRIVAEDVFLPGNDEDPFVERNTLLDEAWVQKIEDASVQSIKVRSTITCQSPFGVCSHCY
GRDLGRGHLVNHGEAVGVVAAQSIGEPGTQLTMRTFHIGGAASRAAAIDNVTVKTTGTVK
FNNLKHVDHAAGHLVAVSRSGELSVLDLHGRERERYKLPYGATVLVKDGASIKAGQTVAS
WDPHNHPIVSEVAGFMRFIDFIDGVTVIEKTDELTGLASREITDPKRRGTQGKDLRPIVR
IVDKNGKDLSIPGTDLPAQYLLPPRSIVNLQDGAPVGVGDVVAKIPQEASKTRDITGGLP
RVADLFEARKPKDPAVLAEVSGIVSFGKDTKGKQRLIIKQADGSEHEELIPKYRQIIVFE
GEHVEKGETVVDGEPSPQDILRLLGVEPLAVYLTKEIQDVYRLQGVKINDKHIEVIVRQM
LRKVEVLDAGDTKFLHGEQVERQRMIEANAAAVAKNEIPSKYDPVLLGITKASLATESFI
SAASFQETTRVLTEAAVRGTRDGLRGLKENVIVGRLIPAGTGLAYHSARRRNASGLTESE
MEALSGSVVTESAPEAAVDAGEESGNS
NT seq
4224 nt
NT seq
+upstream
nt +downstream
nt
atgaaagacttgctcaatctgttcaaccagcagcggcccatgcccgacttcgacgcgatc
aagatcgcgttggcgtcgccggacctcatccgctcgtggtcctacggcgaagtgaagaag
ccggagaccatcaactaccgcacgttcaagccggaacgcgatggcctgttctgcgccgcg
atcttcggtccgatcaaggactacgagtgcctgtgcggcaagtacaagcgcatgaagcac
cgcggcgtggtctgcgagaagtgcggcacggaagtgacgctggccaaggtgcgccgcgag
cgcatgggccacatcgacctggcctcgcccgtcgcgcacatctggttcctgaagtcgctc
ccgtcgcgcatcggtttgatgctcgacatgacgctgcgcgacatcgaacgcatcctgtac
ttcgaagcgtacgtcgtgaccgagccgggcctgaccccgctcgagcgcggcaacctgctg
accgaagaacagttcatgcaggcgcgccaggaacacggcgatgacttcgacgccgcgatg
ggcgccgaggccgtgtacgagctgctgcgcacgatcgacctgcagtcggagatgctccgc
ctgaaggaagagatcgccgcgaccaactccgagaccaagctcaagcgcctcaccaagcgc
atcaagctgatcgaggcgttcctcgactccggcaaccgcccggagtggatggtcatgacc
gtgctgccggtgctgccgccggacctgcgtccgctggtgccgctggatggcggccgcttc
gcgacgtcggacctcaacgacctgtaccgccgcgtcatcaaccgcaacaatcgcctcaag
cgcctgctcgagctcaatgcgccggacatcatcgtgcgcaacgagaagcgcatgctgcag
gagtcggtcgacgccctgatggacaacggccgtcgcggccgcgccatcaccggtaccaac
aagcgcccgctcaagtcgctcgccgacatgatcaagggcaagcagggtcgcttccgccag
aacctgctcggcaagcgcgtcgactactcgggccgttcggtcatcgtggtcggcccgacg
ctgcgcctgcacgagtgcggcctgccgaagaagatggcgctggagctcttcaagcccttc
atctttgccaagctgcagcgccgtggcctcgccacgacgatcaaggccgccaagaagctg
gtcgagcgcgaagaagcggaagtgtgggacatcctcgaggaagtgatccgcgagcacccg
gtcctgctcaaccgcgcgccgacgctgcaccgcttgggcatccaggcgttcgagccggtg
ctgatcgaaggcaaggcgatccagctgcatccgctggtctgcaccgcgttcaacgccgac
ttcgacggcgaccagatggccgtgcacgtcccgctgtcgctggaagcgcagctggaagcg
cgcgcgctgatgatggcgtcgaacaacatcctgtcgcccgccaacggcgagccgatcatc
gtgccgtcgcaggacgtcgtgctcggcctgtactacatgacccgcgccctcgagaacaag
aagggtgaaggcatggcgttcgcgaacgtcgccgaggtcaagcgcgcgtacgacaaccgc
gtcgtcgagatccacgccaaggtcaaggtgcgcatcacggaaaccgtggtcgccgaagac
ggctcgcgctcgaagaagacctcgatcgtcgacacgacggtcggtcgttcgctgctgcag
gaaatcctgccggaaggcctgccgtaccagctggccaacaccgagctgacgaagaagaac
atctcgcgcctgatcaactcctgctaccgcatgctcggcctgaaggacacggtcgtgttc
gccgacaagctgatgtacaccggcttcgcgtacgccacgcgcgccggcgtttcgatcggc
atcgacgacatgatcatcccgggcgagaagaagggcatcctggacgaggcggaagccgag
gtcctggaaatccagcagcagtaccagtcgggcctggtcaccgcgggcgagcgctacaac
aaggtcgtcgacatctggtcgcgcacgaacgagcgcgtggccaaggcgatgatggacgcg
atcggcaccgacaccgtgctcaacgccaagggcgagcgcgttccgcagaagtccatgaac
tcgatctacatcatggccgactccggtgcgcgtggttcgcaggcgcagatccgccagctg
gccggcatgcgtggcctgatggccaagccggacggctcgatcatcgagacgccgatcacc
gcgaacttccgcgaaggcctcaacgtcctccagtacttcatctcgacccacggcgcccga
aagggtctcgcggataccgcgctgaagacggcgaactcgggttacctgacccgtcgcctc
gtggacgtcgcgcaggacgtggtcatcaccgagaccgattgcggcacgttcgacggcctc
accatgacgccgatcgtcgaaggcggcgatgtcgtcgagccgctgcgcgaccgcgtgctg
ggccgcatcgtggccgaagacgtgttcctgccgggcaacgacgaagatcccttcgtcgag
cgcaacacgctgctcgacgaggcgtgggtgcagaagatcgaggacgccagcgtccagtcg
atcaaggtgcgctccacgatcacctgccagagcccgttcggcgtgtgctcgcattgctac
ggtcgcgacctgggccgcggccacctggtcaaccacggcgaagcggtcggcgtcgtcgcc
gcgcagtcgatcggcgagccgggcacgcagctcaccatgcgtacgttccacatcggtggt
gcggcgtcgcgtgcggcggcgatcgacaacgtgacggtcaagacgaccggtacggtgaag
ttcaacaacctcaagcacgtcgaccacgctgccggtcacctcgtcgcggtctcgcgttcg
ggtgaactgtcggtgctcgacctgcacggccgcgagcgcgagcgctacaagctcccgtac
ggcgccaccgtgctggtcaaggacggcgcgagcatcaaggccggccagaccgtggccagc
tgggatccgcataaccacccgatcgtgtcggaagtggccggtttcatgcgcttcatcgac
ttcatcgacggcgtcaccgtcatcgagaagaccgacgagctcaccggcttggcgtcgcgc
gaaatcaccgatccgaagcgtcggggcacgcagggcaaggacctccgcccgatcgtgcgc
atcgtcgacaagaacggcaaggacctctccatcccgggcaccgacctgccggcgcagtac
ctgctgccgccgcgctcgatcgtgaacctgcaggacggcgcgccggtcggcgtgggcgac
gtggtcgccaagatcccgcaggaagcgtcgaagacccgcgacatcaccggtggtctgccg
cgcgtggccgacctgttcgaagcgcgcaagccgaaggatccggcggtcctcgccgaggtc
tcgggcatcgtcagcttcggcaaggacaccaagggcaagcagcgcctgatcatcaagcag
gccgacggcagcgagcacgaagagctgatcccgaagtaccgccagatcatcgtgttcgaa
ggcgagcacgtggagaagggcgagaccgtggtggacggcgaaccgagcccgcaggacatc
ctgcgcctgctcggcgtggagccgctggcggtctacctgaccaaggaaatccaggacgtc
taccgcctgcagggcgtcaagatcaacgacaagcacatcgaagtgatcgtccgccagatg
ctgcgcaaggtcgaagtgctcgacgccggggacaccaagttcctgcacggcgagcaggtc
gagcgccagcgcatgatcgaagcgaacgccgcggcggttgcgaagaacgagatcccgtcc
aagtacgacccggtgctgctgggcatcaccaaggcctcgctggccaccgagtcgttcatc
tcggcggcttcgttccaggagaccacccgcgtgctgaccgaggctgccgtccgcggcacc
cgcgacggcctgcgcggcctgaaggaaaacgtgatcgtgggtcgtttgatccccgcgggc
acgggcctggcctaccacagcgcacgccgccgcaacgcctcgggcctcaccgagtcggag
atggaggcactgtcgggttcggtcgtcaccgaatcggcgccggaagcggcggtcgatgcg
ggcgaggagtccggcaacagctaa
DBGET
integrated database retrieval system
