Noviluteimonas caseinilytica: LYSCAS_06350
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Entry
LYSCAS_06350 CDS
T07541
Name
(GenBank) ATP-dependent helicase
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
lcas
Noviluteimonas caseinilytica
Brite
KEGG Orthology (KO) [BR:
lcas00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lcas03019
]
LYSCAS_06350
Enzymes [BR:
lcas01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
LYSCAS_06350
Messenger RNA biogenesis [BR:
lcas03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
LYSCAS_06350
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
Helicase_C
OB_NTP_bind
DEAD
HA2_C
AAA_19
AAA_22
HA2_N
nSTAND3
SRP54
AAA_30
AAA_23
TsaE
AAA_25
NACHT
PhoH
AAA_16
Motif
Other DBs
NCBI-ProteinID:
BCT91611
LinkDB
All DBs
Position
complement(642213..646199)
Genome browser
AA seq
1328 aa
AA seq
DB search
MESSAKTASGRARNAIEGALSKDRGRLLGLWQRWNAKPEDEALRDAFAQALQRSVTVREA
RAAALPKAGVAPDLPIAAEAERIVELIRKHPVVVIAGETGSGKTTQIPKLCLAAGRGAAG
MIGCTQPRRIAARAVARRVAEELQVPVGGAVGFQVRFTDHVSEQTAIKFMTDGILLAEIQ
SDRWLSAYDTIIVDEAHERSLNIDFLLGYLKQLLERRRDLKVIVTSATIDTARFAAHFND
APVVSVEGRGYPVEVRYRPLEGEGDEAGDRTTLDGIVAAFDEIARERPMGDTLIFLPGER
EIRDAHQALERRKYRHTEILPLYARLSARDQDRVFNPGPQRRIVLATNVAETSLTVPRIH
AVVDPGLARVKRYSPRQKLDRLHIEPISQASADQRKGRCGRIAPGTCYRLYSEPDFESRA
RFTDPEIRRAALAGVILRMLSLGLGGIEDFPFLEPPDPRAVADGWQQLHELGAVEEGGSN
EARQARKLTAIGRTMARMPVDVKLARMLVAAKDIGCLREMLVIAAFLGIQDPRERPSDQR
GAADTAHALFADPKSEFVGILKLWDAYRVAHEDLTQSKLRAWAEKHFLGFLRLREWRELH
RQLKLLCDELGWQQNDTDAHYADLHRALMTGLPTQLGNRGDRGLYDGPRGRKFQLFPGSP
LAKKPPPWVLSATLLDTERVWSLTNAAIEPEWAIDALPHLLARRQHDPRWARSQGRVVGS
EQISLFGLVLAPKRPIHYGALFPEEARQIFVRDALLTGEINTRSAFLPRNLATLAKAKEE
EAKQRRAGLVVDEEWQAQWYLDRLPPHVHNAQALDAWYGRLSKEAKLALDWSLADLMVGD
QSDAMRFPPWLALGDARLAVRYRFEPGAPDDGMTIVVPLHLLNALDPARLSWLAPGFIAD
KAAALIKSLPKALRRNFVPAPDFARAFAEAFPEPTADSIEGALARFLHKLTGVAVATTDF
APETVEAHFHANLRLLDAGTRDRGPGTGGEARVLAETRDLSELRERFSARAEAAFAARAS
EGMAAQGLVVFPERAIPVSVPGAGGVPAYPALEDRGDSVALHVHANREEAARRHPEGVRR
LLHLALADRLKQARKQLPVQPKTALLYAAIESAAPRTMAGNDSDRLRADLVDGAFAALSA
QGLEDIRDADAFAHRRDAIAKGLFPEAMARLQQAQAILGLVADVRAGLDPKLVGWASGNL
DDMRAQLAQLVPPGFLRDVPATALADYPRYLRALVLRSERALRDPGKDQARMLELKPFAD
AVASAAANDLLGEPDWQALRWDLEELRVSLFAQELGARAGVSPKRLAQRLRDLGTGDRGP
GTRKSQRS
NT seq
3987 nt
NT seq
+upstream
nt +downstream
nt
atggaatcgagtgcaaagaccgcgtcagggcgggcccgcaacgccatcgagggcgcgctc
tcgaaggaccgcggccgcctgctcggcctctggcagcgctggaacgcgaagccggaagac
gaggctttgcgcgatgccttcgcccaggcgctgcagcgctcggtcaccgtgcgcgaggcc
cgcgcggccgccttgccgaaggccggggtggcaccggacctgccgatcgcggcggaagcc
gaacgcatcgtcgaactgatccgcaagcacccggtggtggtgatcgcgggcgaaaccggc
tcgggcaagaccacgcagatcccgaagctgtgcctggccgcgggccgcggcgccgccggg
atgatcggctgcacgcagccgcgccgcatcgccgcgcgcgcggtggcgcgacgcgtcgcc
gaggaattgcaggtgccggtgggcggggccgtggggttccaggtgcgcttcaccgaccac
gtgtcggagcagaccgcgatcaagttcatgaccgacggcatcctgctggcggaaatccag
tccgatcgctggctgtcggcgtacgacacgatcatcgtggacgaagcgcacgagcgcagc
ctcaacatcgatttcctgctggggtacctgaagcagctgctcgaacgccggcgcgatctc
aaggtcatcgtgacctcggcgaccatcgacaccgcgcgcttcgcggcgcacttcaacgat
gcgccggtggtgagcgtggaagggcgcgggtatccggtggaagtgcgctatcgcccgctg
gaaggcgaaggcgacgaggcaggcgatcgcaccacgctcgacggcatcgtcgcggccttc
gacgaaatcgcgcgcgaacgcccgatgggcgacacgctgatcttcctgccgggcgagcgt
gaaatccgcgacgcgcaccaggcgctggaacgccgcaagtatcgccacaccgaaatcctg
ccgctgtatgcgcgcctgtccgcgcgcgaccaggaccgcgtgttcaatcccggcccgcag
cggcgcatcgtgctcgcgaccaacgtggcggaaacctcgttgaccgtgccgcgcatccac
gcggtggtcgatccgggcctggcgcgcgtgaagcgctacagcccgcggcagaaactcgat
cgcctgcacatcgaaccgatcagccaggccagtgccgaccagcgcaaggggcggtgcggg
cgcatcgcgccgggcacgtgctatcgcctgtattcggaaccggatttcgaatcgcgcgcg
cgcttcaccgatccggaaatccgccgcgccgcgctcgcgggcgtgatcctgcggatgctg
tcgctgggcctgggcggcatcgaagacttcccgttcctcgaaccgcccgatccgcgcgcg
gtggcggatggctggcagcagctgcatgaacttggtgcggtggaagagggcggctccaac
gaagcacgccaggcgcgcaagctcaccgcgatcggccgcacgatggcgcggatgccggtg
gacgtgaagctggcgcgcatgctggtggcggcgaaggacatcggctgcctgcgcgagatg
ctcgtcatcgccgcgttcctcggcatccaggatccgcgcgagcgtccgtcggaccagcgc
ggcgcggccgacacggcgcatgcgctgttcgccgatccgaagtcggaattcgtcggcatc
ctcaagctgtgggacgcctaccgcgtcgcgcacgaagacctcacgcagtcgaagctgcgc
gcgtgggccgagaaacacttcctcggcttcctgcgcctgcgcgaatggcgcgaactgcat
cgccagctgaaactgctgtgcgacgaactgggctggcagcagaacgacacggacgcgcat
tacgcggatttgcaccgcgcgttgatgacgggcttgccgacgcaactcggcaaccgcggc
gatcgcgggctgtacgacgggccgcgcgggcgcaagttccagttgttcccgggctcgccg
ctggcgaagaagccaccgccgtgggtgttgtccgcaacgctcctcgataccgagcgcgtg
tggtcgctcaccaacgccgcgatcgaacccgaatgggcgatcgacgcgctgccgcacctg
cttgcccggcgccagcacgatccgcgctgggcgcgttcgcaggggcgcgtggtcggcagc
gaacagatttccctgtttggcctggtgctcgcgcccaagcgcccgatccattacggcgcg
ctgttcccggaagaagcgcggcagatcttcgtgcgcgatgcgttgctgacgggcgagatc
aacacgcgcagtgcgttcctgccgcgcaacctggccacgctggcgaaggcgaaggaagaa
gaagccaagcagcgccgcgcaggtctggtggtcgacgaggagtggcaggcgcagtggtac
ctcgatcgcctgccgccgcacgtgcacaacgcgcaggcgctggatgcttggtacgggcgg
ttgtcgaaggaggcgaagctcgcgctcgactggtcgctcgccgacctgatggtcggcgac
cagagcgacgcgatgcggttcccgccgtggcttgcgctgggcgatgcgcggctggcggtg
cggtatcgcttcgaaccgggcgcgccggacgacggcatgacgatcgtggtgccgctgcat
ttgttgaatgcgctggatccggcgcgcttgtcgtggctggcgcccgggttcatcgccgac
aaggccgcggcgctcatcaagtcgttgccgaaggcattgcggcgcaacttcgtgccggcg
ccggatttcgcgcgcgcgttcgcggaggcgttcccggaaccgacggcggacagcatcgaa
ggcgcgcttgcgcgcttcctgcacaagctgacgggcgtggcggtggcgacgaccgatttc
gcaccggaaacggtggaggcgcatttccacgcgaacctgcgactgctcgatgcggggacc
cgggaccggggaccagggaccgggggtgaagcgcgggtgcttgcggagacgcgcgacctt
tcggaattgcgcgaacgattcagtgcgcgcgcagaagcggcgtttgcggcgcgtgcctcc
gaaggcatggcggcgcaggggctggtcgtgtttcccgagcgcgcgattcccgtctccgtg
ccgggcgcgggcggcgtgcctgcgtatcccgcgctcgaggatcgcggcgacagcgttgcg
ctgcacgtgcacgccaatcgcgaggaagccgcgcggcgccatcccgaaggcgtgcggcgc
ttgctgcacctcgcgctcgccgatcgcttgaagcaggcgcgcaagcagttgcccgtccag
ccgaagaccgcgttgttgtatgcggccatcgaatccgccgcgccgcgcacgatggcgggc
aacgacagcgaccgcctgcgcgcggacctggtcgatggggcattcgccgccctgtccgcg
caggggctggaggacatccgcgacgcggacgccttcgcgcaccgccgcgatgcgattgcc
aagggcctgttccccgaagcgatggcgcgcctgcagcaggcgcaggcgatcctcgggctg
gtggccgacgtgcgcgcgggcctggacccgaagctggtcggctgggcctcgggcaacctg
gacgacatgcgggcgcagctcgcgcagttggtgccgccgggcttcctgcgcgacgtgccc
gccaccgcgctcgccgattacccgcgttacctgcgcgcactggtgctgcgcagcgaacgc
gccctgcgcgacccgggcaaggaccaggcccggatgctggagctcaagcccttcgccgat
gcggtggcgtcggcggccgccaatgacctgctgggcgaaccggactggcaggcgttgcgc
tgggacctggaggaactgcgcgtgtcgctgttcgcgcaggaactgggcgcgcgggcgggg
gtgtcgccgaagcggctggcgcagcgcttgcgagatctcgggaccggggaccggggaccg
gggaccaggaagagccaacgctcttga
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