Noviluteimonas caseinilytica: LYSCAS_13210
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Entry
LYSCAS_13210 CDS
T07541
Symbol
rhlB
Name
(GenBank) ATP-dependent RNA helicase RhlB
KO
K03732
ATP-dependent RNA helicase RhlB [EC:
5.6.2.7
]
Organism
lcas
Noviluteimonas caseinilytica
Pathway
lcas03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lcas00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LYSCAS_13210 (rhlB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lcas03019
]
LYSCAS_13210 (rhlB)
Enzymes [BR:
lcas01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
LYSCAS_13210 (rhlB)
Messenger RNA biogenesis [BR:
lcas03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
LYSCAS_13210 (rhlB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
RhlB
Helicase_C
ResIII
Cas3-like_C_2
Helicase_C_2
Motif
Other DBs
NCBI-ProteinID:
BCT92297
LinkDB
All DBs
Position
complement(1368869..1370785)
Genome browser
AA seq
638 aa
AA seq
DB search
MTLSFMCVLGTAWAWEGSLALGAPRAAARLGRYPRRLQAPPAPPNRWPAVCFADAPRRKG
DHRAPQAAFRRMSDKPLTDIAFSEFDLHPALLAGLEAAGFNRCTPIQALTLPLALAGRDV
AGQAQTGTGKTLAFLIAVINRLLTRPALADRKPEDPRALILAPTRELAIQIHKDAVKFAD
ALGLKFALVYGGVDYDKQRQILQSGADVIIATPGRLIDYVKQHKVVSLHACEMCVLDEAD
RMFDLGFIKDIRFLLRRMPVRTERQTLLFSATLSHRVLELAYEHMNEPEKLVVETESITA
ARVRQKIYYPADEEKIPLLIGLLSRSEGARTMVFVNTKAFVERVARALEKAGYRVGVLSG
DVPQKKRESLLKKFQAGQLEILVATDVAARGLHIDGVSHVYNYDLPFDAEDYVHRIGRTA
RLGAEGDAISFACERYGMSLPDIEAFIDQKIPGEHVTADMLVAMPRTPRPVVEGAEPEES
VSSIFREAREQKAADEERRGGGRSKPGAGRSSPGGGRPGERRPHGERGPRPPRKPEGVPA
AAAVDGSAPQPVAAAPRPPRPPQASVEGAPDAERAPRKRRRRRGGKRIEGADALPMQQSA
PAQVGAKPASVPDASPSLLSRVAKGLKALVTRAPRSQH
NT seq
1917 nt
NT seq
+upstream
nt +downstream
nt
atgacgttgtcgttcatgtgcgtcctcggaactgcttgggcgtgggaaggcagcctggcg
ctcggtgcgccgcgggctgctgctagacttgggcgctatccgcggcggcttcaagccccg
cccgcacccccgaatcgatggccggcagtctgcttcgcggacgccccccgacgcaagggc
gaccaccgcgccccacaggcagccttccgacgcatgagcgacaagccccttaccgatatc
gccttctccgagttcgacctccatccggcgctgctcgccggcctggaagccgcggggttc
aaccgctgcacgccgatccaggcgctcaccctgccgctcgccctcgcgggccgcgacgtc
gccggccaggcgcagaccggcaccggcaagacgctggcgttcctgatcgccgtcatcaac
cgcctgctcacgcgcccggcgctggccgatcgcaagccggaagatccgcgcgcgctgatc
ctggcgcccacgcgcgaactggcgatccagatccacaaggacgcggtgaagttcgccgac
gcgctgggcctgaagttcgcgctggtctacggcggcgtggattacgacaagcagcgccag
atcctgcagtcgggcgccgacgtcatcatcgccacgcccggccgcctgatcgactacgtc
aagcagcacaaggtggtttcgctgcacgcgtgcgagatgtgcgtgctggacgaagccgac
cgcatgttcgacctgggcttcatcaaggacatccgcttcctgctgcgccgcatgccggtg
cgcaccgagcgccagacgctgctgttctccgccacgctctcgcaccgcgtgctcgagctg
gcctacgaacacatgaacgagccggagaagctggtcgtcgagaccgagtccatcaccgcc
gcgcgcgtccgccagaagatctactacccggccgacgaagagaagatcccgctcctcatc
ggcctgctctcgcgcagcgaaggcgcgcggacgatggtgttcgtgaacaccaaggcgttc
gtcgaacgcgtggcgcgcgcgctggagaaggccggctaccgcgtcggcgtgctctccggc
gacgtgccgcagaagaagcgcgagtcgctgctcaagaagttccaggccggccagctcgag
atcctggtggccaccgacgtcgccgcgcgcggcctgcacatcgatggcgtctcgcacgtc
tacaactacgacctgccgttcgacgccgaggactacgtccaccgcatcggccgcaccgcc
cgcctgggcgccgagggcgacgcgatcagcttcgcctgcgagcgctacggcatgtcgctg
cccgacatcgaagccttcatcgaccagaagatcccgggcgagcacgtcaccgccgacatg
ctggtcgcgatgccgcgcacgccccgcccggtggtggaaggcgcggagccggaagaaagc
gtcagttccatcttccgcgaagcgcgcgagcagaaggccgcggacgaagaacgccgtggc
ggtggtcgcagcaagcctggcgcggggcgttcgtcgcccggcggcgggcgccccggcgag
cgtcgcccgcacggtgagcgcggtccgcgcccgccgcgcaagcccgaaggcgtgcccgct
gccgcggccgtcgatggcagcgcgccgcagcccgtggccgccgcacccaggcccccgcgc
ccgccgcaggcctcggtcgaaggcgcgccggatgccgaacgcgcgccgcgcaagcgtcgt
cgtcgtcgcggcggcaagcgcatcgaaggcgccgacgcgctgccgatgcagcagtccgcg
cccgcgcaggtcggcgccaagccggcctccgtgcccgacgccagcccctcgctgctgtcc
cgcgtcgcgaagggcctgaaggcgctggtcacgcgcgcaccgcgctcgcagcactga
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