Lysobacter caseinilyticus: LYSCAS_22960
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Entry
LYSCAS_22960 CDS
T07541
Symbol
vacB
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
lcas
Lysobacter caseinilyticus
Pathway
lcas03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lcas00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LYSCAS_22960 (vacB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lcas03019
]
LYSCAS_22960 (vacB)
03016 Transfer RNA biogenesis [BR:
lcas03016
]
LYSCAS_22960 (vacB)
Enzymes [BR:
lcas01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
LYSCAS_22960 (vacB)
Messenger RNA biogenesis [BR:
lcas03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
LYSCAS_22960 (vacB)
Transfer RNA biogenesis [BR:
lcas03016
]
Prokaryotic type
tRNA degradation factors
LYSCAS_22960 (vacB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
OB_Dis3
Rho_RNA_bind
Motif
Other DBs
NCBI-ProteinID:
BCT93272
LinkDB
All DBs
Position
complement(2404414..2406864)
Genome browser
AA seq
816 aa
AA seq
DB search
MRAMAKHPSKRGGSRGKSATPPGATPTKSRGPAKGGAPGAKTGGPRHKAAQRPGWMPEPR
PGGPKAPARAAPSRDPNHAREAARYEQPIASREMLLRILEANEGPMDAQELAVKLALTEP
DRFDALAKRLGAMVRDGQLLQNRKGAYAPAERLDLIPGVVIANPEGFGFLRPEKGQGDDL
FLPPNEMRKVMHGDRVLASVTGMDRRGRREGAIVEVLERRLTRLIGRYTVEAGISYVVPD
DRRIQRNVLIPPGESSDAKTGQLVVAEIVHAQDAQRPPIGKVLAVLGDKLTASLAVKAAI
HAHEIPDEFPPEVLAEATAVPLVVEPSMIEGRVDLRQLPLVTIDGEDAKDFDDAVYAEPT
RDGFRLIVAIADVSNYVKPGTPLDDEAQLRATSVYFPGFVVPMLPETLSNGICSLMPNVD
RMCFVCDMHIDREGVVTKSKFYEAVMNSHARLTYTQVWNAVDEAALPEHREDALQRIGSL
LPQIQRLHQLFHVLKKARTKRGAIEFESSEVRFVLGPQGEVTQAGMIQRNDAHMLIEECM
IAANVEAARYVLKKKIPAPFRVHDKPPEAKYTDLLEFLKEFKLKMPPWAKVEPRDFTALL
KKIRERPDATLLESVLLRSQSMAVYAHENLGHFGLALEAYGHFTSPIRRYPDLLLHRAIK
HALMGGTATNYLYSDHVMAALCLQCSERERRADEAEREVDERYRAAWMEQHVGGQFSGTI
SGVTSFGLFIELDDSKVNGLVHVTQLPNDYYHFDPIRKTLKGERTGREFRLGDRADIVVL
KASVEDRKIDFRLVEEKGVMPPPPRGTPAKKVKQKY
NT seq
2451 nt
NT seq
+upstream
nt +downstream
nt
atgcgcgccatggccaaacaccccagcaagcgcggcggcagccgcggcaagtccgcgacc
ccgcccggcgcgacccccacgaaatcccgcggtcccgcaaaaggcggcgcccccggcgcc
aagaccggcggcccgcggcacaaggcggcacagcgtcccggctggatgcccgagccccgc
cccggtggtccgaaagcccccgcccgcgccgcccccagccgcgacccgaaccatgcccgc
gaagccgcgcgctacgaacaacccatcgccagccgcgaaatgctgctgcgcatcctggag
gccaacgaaggcccgatggacgcgcaggaactggcggtcaagctcgcgctcaccgaaccc
gatcgcttcgatgcattggccaagcgcctcggcgcaatggtgcgcgacggacagctgctg
cagaaccgcaagggcgcgtacgcgcctgccgaacgcctcgacctgatccccggcgtggtg
atcgcgaatccggaaggcttcggtttcctgcgtcccgaaaaaggccagggcgacgacctc
ttcctgccgcccaacgaaatgcgcaaggtgatgcatggcgatcgcgtgctcgcgtccgtc
accggcatggatcgccgcggtcgccgcgaaggcgcgatcgtcgaagtgctggagcgtcgc
ctcacgcgcctgatcggccgttacaccgtggaagccggcatcagctacgtcgtgccggac
gatcgccgcatccagcgcaacgtgctgatcccgccgggcgaaagcagcgatgcgaagacc
ggccagctggtcgtcgcggaaatcgtgcacgcgcaggatgcgcagcgcccgccgatcggc
aaggtgctcgcggtgctcggcgacaagctcaccgcgtcgctcgcggtgaaagccgccatc
cacgcgcacgagatcccggatgaattcccgccggaggtcctcgctgaagcgaccgccgtg
ccgctggtggtcgagccgtcgatgatcgaaggccgcgtcgacctgcgccagctgcccctc
gtcaccatcgatggcgaagacgcgaaggacttcgacgacgcggtgtacgccgaacctacg
cgcgacggcttccgcctgatcgtcgcgatcgcggacgtttcgaattacgtcaagccaggc
acgccgctggacgatgaagcgcaactgcgcgcgacgtcggtgtacttcccaggcttcgtc
gtgccgatgctgccggaaacgttgtcgaacggcatctgctcgctgatgcccaacgtcgac
cgcatgtgcttcgtgtgcgacatgcacatcgaccgcgagggcgtggtcaccaagtccaag
ttctacgaagcggtgatgaactcgcacgcgcgcctgacctacacccaggtctggaacgcg
gtggacgaggcggcgctgccggaacaccgcgaggacgcgctgcagcgcatcggctcgctg
ctgccgcagatccagcgcctgcaccagctcttccacgtgctgaagaaggcgcgcaccaag
cgcggcgcgatcgagttcgaatcctccgaagtgcgcttcgtgctcggcccgcagggcgag
gtcacgcaggccggcatgatccagcgcaacgacgcgcacatgctgatcgaggaatgcatg
atcgcggcgaacgtggaagccgcgcgctacgtgctgaagaagaagatccccgcgccgttc
cgcgtgcacgacaagccgccggaagccaagtacacggacctgctggagttcctgaaggaa
ttcaagctcaagatgccgccgtgggcaaaggtggagccgcgcgatttcaccgcgctgctg
aagaagatccgcgaacggccggacgcgacgttgctggagtccgtgctgctgcgcagccag
tcgatggcggtgtacgcgcacgagaacctgggccacttcgggctggcgctggaggcgtac
gggcacttcacctcgccgatccgccgctatcccgacctgctgctgcatcgcgcgatcaag
catgcgctgatgggcggcaccgccaccaactatctctacagcgaccacgtgatggccgcg
ctgtgcctgcagtgttcggaacgcgaacgccgtgccgacgaagccgagcgcgaggtcgac
gagcgctaccgcgccgcgtggatggaacagcacgtgggcgggcagttcagcggcacgatc
agcggcgtcaccagcttcggcttgttcatcgaactggatgattcgaaggtcaacggcctg
gtgcacgtgacgcagctgccgaacgactactaccacttcgacccgatccggaagacgctc
aagggcgaacgcaccgggcgcgagttccgcctgggcgaccgcgcggacatcgtggtgctg
aaggcgagcgtggaagaccggaagatcgacttccgcctggtggaggagaaaggcgtgatg
ccgcctccgccgcgcgggacgccggcgaagaaggtgaagcagaagtactga
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