Noviluteimonas caseinilytica: LYSCAS_24870
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Entry
LYSCAS_24870 CDS
T07541
Symbol
pnp
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
lcas
Noviluteimonas caseinilytica
Pathway
lcas03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lcas00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LYSCAS_24870 (pnp)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lcas03019
]
LYSCAS_24870 (pnp)
03016 Transfer RNA biogenesis [BR:
lcas03016
]
LYSCAS_24870 (pnp)
Enzymes [BR:
lcas01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
LYSCAS_24870 (pnp)
Messenger RNA biogenesis [BR:
lcas03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
LYSCAS_24870 (pnp)
Transfer RNA biogenesis [BR:
lcas03016
]
Prokaryotic type
tRNA degradation factors
LYSCAS_24870 (pnp)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
S1
RNase_PH_C
PNPase
KH_1
S1_RRP5
OB_RRP5_4th
KH_2
KH-I_KHDC4-BBP
KH_PNO1_2nd
S1_2
KH_KhpA-B
Motif
Other DBs
NCBI-ProteinID:
BCT93463
UniProt:
A0ABM7Q7S6
LinkDB
All DBs
Position
2602645..2604753
Genome browser
AA seq
702 aa
AA seq
DB search
MAKITKTFQYGKHEVTLETGEVARQASGAVVVKVDGTVLLVTAVAAKSAREGQDFFPLTV
DYQEKFYAGGRIPGGFFKREGRQTEKETLISRLIDRPIRPLFPEDYRNEVQIIATVMSLN
PEVDGDIPALIGASAALSLAGTPFQGPIGAAKVGYKNGQYILNPSMTELADSELELVVAG
TSNAVLMVESEAKELSEDVMLGAVMFGHREMQKVINAINELTVEAGTKANTWVEPTKHQG
LIAAIKEGAGTQLAQAYQIRDKGQRRDAIQAIKKDLWAQLSGRAEAEAFTQGEFGKEFGE
LEYQTMRGSVLSTKVRIDGRALDTVRPINSQVGILPRTHGSSLFTRGETQAIVVATLGTA
RDGQIIDAVAGEYKEHFLFHYNFPPFSVGEAGRMMGPKRREIGHGRLAKRGVLAVMPSME
AFPYTIRIVSEITESNGSSSMASVCGSSLALMDAGVPISAPVAGIAMGLVKEGDDFVVLS
DILGDEDHLGDMDFKVAGTQKGISALQMDIKIQGITEEIMKVALAQAKAGRLHILGEMAN
AITTPRGELSEFAPRLLTMKIHPDKIREVIGKGGSTIQAITKETGTQIDIQDDGTIVIAS
VNAAAAQAAKARIEQITSDVEPGRIYEGKVVKLMDFGAFVTILPGKDGLVHVSQISNERV
EKVSDKLKEGDVVKVKVLEVDKQGRIRLSMKAVEEGEGVTAE
NT seq
2109 nt
NT seq
+upstream
nt +downstream
nt
gtggcgaaaatcaccaagaccttccagtacggcaagcacgaagtcaccctcgaaaccggc
gaagtcgcccgccaggcgtccggcgccgtggtcgtcaaggtcgacggcaccgtcctgctg
gtcaccgccgtcgccgccaagtcggcgcgcgaaggccaggacttcttccccctcacggtg
gactaccaggagaagttctacgccggcggccgcatcccgggcggcttcttcaagcgcgaa
gggcgccagaccgaaaaggaaacgctgatctcgcgcctgatcgatcgcccgatccgcccg
ctgttccccgaggactaccgcaacgaagtccagatcatcgccacggtgatgtcgctcaac
ccggaagtcgacggtgacatcccggcgctgatcggcgcgtccgccgcgctgtcgctcgcc
ggcaccccgttccagggcccgatcggcgccgccaaggtcggttacaagaacgggcagtac
atcctcaacccgtcgatgacggaactcgccgattccgaactcgaactcgtcgtcgccggc
acgtccaacgccgtgctgatggtcgagtccgaagcgaaggaactgtcggaagacgtgatg
ctcggcgccgtgatgttcggccaccgcgagatgcagaaggtcatcaacgcgatcaacgaa
ctcaccgtcgaagccggcacgaaggccaacacgtgggtcgagccgaccaagcaccagggc
ctgatcgccgccatcaaggaaggcgccggcacgcagctcgcgcaggcctaccagatccgc
gacaagggccagcgccgcgacgccatccaggcgatcaagaaggacctgtgggcgcagctc
tcgggccgcgccgaggccgaagccttcacgcagggcgaattcggcaaggaattcggcgaa
ctggaataccagacgatgcgcggctcggtcctgtcgaccaaggtccgcatcgacggtcgc
gcgctcgacaccgtgcgcccgatcaactcgcaggtcggcatcctgccgcgcacgcacggc
tcctcgctgttcacgcgtggcgagacgcaggcgatcgtggtcgccacgctcggcaccgcg
cgcgatggccagatcatcgacgccgtcgccggcgagtacaaggagcacttcctgttccac
tacaacttccccccgttctccgtgggtgaagccggccgcatgatgggcccgaagcgccgc
gaaatcggccacggccgcctcgccaagcgcggcgtgctcgccgtgatgccgtcgatggaa
gccttcccgtacaccatccgcatcgtgtcggaaatcaccgagtccaacggttcctcgtcg
atggcctccgtctgcggttcctcgctggcgctgatggacgcgggcgtgccgatctccgcg
ccggtcgcgggcatcgcgatgggcctggtgaaggaaggcgacgacttcgtcgtgctgagc
gacatcctgggcgacgaagaccacctcggcgacatggacttcaaggtggccggcacgcag
aagggcatctcggcgctgcagatggacatcaagatccagggcatcaccgaggaaatcatg
aaggtcgcgctggcccaggcgaaggccggccgcctgcacatcctcggcgagatggccaac
gccatcaccacgccgcgcggtgagctgagcgagttcgcgccgcgcctgctgacgatgaag
atccaccccgacaagatccgcgaagtgatcggcaagggcggctcgaccatccaggcgatc
accaaggaaaccggcacgcagatcgacatccaggacgacggcacgatcgtcatcgcttcg
gtcaacgccgccgccgcccaggccgcgaaggcgcgcatcgagcagatcacctccgacgtc
gagccgggccgcatctacgaaggcaaggtcgtcaagctgatggacttcggcgcgttcgtg
accatcctgccgggcaaggacggcctggtgcacgtctcgcagatctccaacgagcgcgtc
gagaaggtcagcgacaagctcaaggaaggcgacgtggtgaaggtcaaggtgctggaagtc
gacaagcagggccgcatccgcctgtcgatgaaggccgtggaagaaggcgagggcgtgacc
gccgagtaa
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