Noviluteimonas caseinilytica: LYSCAS_27790
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Entry
LYSCAS_27790 CDS
T07541
Name
(GenBank) hypothetical protein
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
lcas
Noviluteimonas caseinilytica
Pathway
lcas03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lcas00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LYSCAS_27790
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lcas03019
]
LYSCAS_27790
03009 Ribosome biogenesis [BR:
lcas03009
]
LYSCAS_27790
Enzymes [BR:
lcas01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
LYSCAS_27790
Messenger RNA biogenesis [BR:
lcas03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
LYSCAS_27790
Ribosome biogenesis [BR:
lcas03009
]
Prokaryotic type
rRNA processing factors
LYSCAS_27790
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
zf-C2H2_FBX41
Motif
Other DBs
NCBI-ProteinID:
BCT93755
LinkDB
All DBs
Position
complement(2864782..2868045)
Genome browser
AA seq
1087 aa
AA seq
DB search
MLINATQAEELRVATVDGQTLYDIDIEQPSKEQKKSNIYKGRITRLEPSLEAAFVEYGGE
RHGFLPLKEISRDYFAAGVDPNKASLKELLREGQEIVVQVDKEERGNKGAALTTFISLAG
RYMVLMPNSPTAGGVSRRIEGDDRAALKEAMDKLQIPDDMGVIIRTAGVGRDAEELQWDL
DYLLQVWKAIAEAALSKPSPFLIYQESRLIIRALRDYMRADIGEILVDTDEMYAEAREFV
QQVMPHNLRKLKHYTDDTPLFNRFQIESQIENAYERTVRLPSGGALVIDQTEALTAVDVN
SARATKGGDIEETAFHTNLEAAEEVARQLRLRDLGGLVVIDFIDMSSNKHQREVENKLQN
ALKYDRARVQLGRISRFGLLEMSRQRLRPSLGESSQLVCPRCDGHGRMRSVESLSLSILR
VAEEHAMKENTGQVLVQAPTEIANYLLNEKRRALGEIEQRHDSPIVIVADDQLETPHYEV
TRIRENELGEETSKPSYQRGTPRKLATHALTKAHLNIPNLPAVTAVKPAQPAPVRDEVRD
EPKPAPMPVAVAAPVAAPAVGGVVGFFKRLFGAPAPVATPAPAPRATEEQRRRERDGRRD
GRGRPQQGRDGQGRRDEQRRDRKDQPQQQKGPRNEGQQQKQQQGQQQGQQQKQAQPQQQH
QKKPRDQQQPRGEQQPREQQAQQAREQQPRDQQRQEQKQRQPRQEPVVDPALANAQVVQP
GVVAANAMTDATLASATLAADQAADATLATSVVTNDAAPSTDVAEGGEGGARRRRGRRGG
RRRRRGQGGAEGEATQDGMAHEHDQDHDDVESGDVAANTRAQPEFDFDDEAPAAPIASAP
VASARAATPAPIATPAPIAASAPTAPPVATPAPVATPAPYVAPASPADPAAAPARDAVAT
PDAFASAPIEVEPARTDTDTSRHTLATESLASAIENAPGDWNDAPYADVATPAQAIDEVN
SPEPIEPASTSRDIAATQPPAFQEPAFEEPAATPSNAAAYAPSFSQADPQPAQAEDVASL
FGAASPSQPSPGLFDAMPSEDPAQAAADAIADEPAVDDTHARVAEAFEPEATPPHPQPPH
EDAPRNV
NT seq
3264 nt
NT seq
+upstream
nt +downstream
nt
atgctcatcaacgcgacgcaggcggaagaactgcgcgtcgccaccgtcgacggccagacc
ctgtacgacatcgacatcgaacaaccgtcgaaggaacagaagaaatccaacatctacaag
ggccgcatcacgcgccttgagccctccctggaagccgccttcgtcgaatacggcggcgag
cgccacgggttcctgcccctgaaggaaatctcccgcgactatttcgcggccggcgtcgac
cccaacaaggcgtcgctgaaggaactcctgcgcgaaggccaggagatcgtcgtccaggtc
gacaaggaagaacgcggcaacaagggcgcggccctcaccacgttcatctcgctggcgggc
cgctacatggtcctgatgcccaactcgccgaccgccggcggcgtctcgcgccgcatcgaa
ggcgacgaccgcgccgccctcaaggaggcgatggacaagctgcagatccccgacgacatg
ggcgtgatcatccgcaccgccggcgtgggccgcgacgcggaagaactgcagtgggacctg
gattacctgctgcaggtgtggaaggccatcgccgaagccgccctcagcaagccctcgccg
ttcctgatctaccaggaatcgcgcctgatcatccgcgccctgcgcgactacatgcgcgcc
gacatcggcgagatcctcgtcgataccgacgagatgtacgccgaggcccgcgagttcgtg
cagcaggtcatgccgcacaacctgcgcaagctcaagcattacacggacgacaccccgctc
ttcaaccgcttccagatcgaatcgcagatcgagaacgcgtacgagcgcaccgtgcgcctg
ccctccggcggcgccctggtgatcgaccagaccgaagccctgaccgcggtggacgtcaac
tccgcccgcgccaccaagggcggcgacatcgaagaaaccgcgttccacaccaacctggaa
gccgcggaagaagtcgcgcgccagctgcgcctgcgcgacctcggcggcctggtggtgatc
gacttcatcgacatgtcgtcgaacaagcaccagcgcgaagtcgagaacaagctgcagaac
gcgctcaagtacgaccgcgcccgcgtgcagctgggccgcatctcgcgcttcggcctgctg
gagatgtcgcgccagcgcctgcgtccgagcctgggcgaatccagccagctggtgtgcccg
cgttgcgacggccacggccgcatgcgcagcgtcgaatcgctgtcgctgtccatcctgcgc
gtggccgaagagcacgcgatgaaggaaaacaccgggcaggtcctggtgcaggcgccgacc
gagatcgccaactacctgctcaacgaaaagcgccgtgcgctcggtgaaatcgagcagcgc
cacgattcgccgatcgtcatcgtcgccgacgaccagctagaaaccccgcattacgaagtc
acgcgcatccgcgagaacgagctcggcgaagaaaccagcaagccgagctaccagcgcggc
acgccgcgcaagctcgccacgcacgcgctgaccaaggcccacctcaacatcccgaacctg
cccgcggtcaccgcggtgaagccggcgcagccggcaccggtgcgcgacgaagtccgcgac
gaacccaagcccgccccgatgccggtggcggtggccgcccccgtcgccgcgcccgcggtc
ggtggcgtggtcgggttcttcaagcgcctgttcggtgcgcccgcgccggtcgccacgccg
gcgcccgcgccgcgtgcgacggaagaacagcgtcgtcgcgaacgcgatggtcgccgcgac
ggtcgtggtcgtccgcagcagggccgtgacggccagggccgtcgcgacgagcagcgccgc
gatcgcaaggaccagccgcagcagcagaagggcccgcgcaacgaaggccagcaacagaag
cagcagcagggccagcagcagggtcagcaacaaaaacaggcccagccgcagcaacagcat
cagaagaagccgcgcgaccagcagcagccgcgtggcgaacagcagccgcgcgaacagcag
gcccagcaggcgcgcgagcagcagcctcgcgaccagcagcgccaggaacagaagcagcgc
cagccgcgccaggaaccggtcgtcgatcccgcgctcgccaatgcgcaggtcgtgcagccc
ggcgtcgtcgccgccaacgcgatgacggatgccacgctcgcatcggccacgctcgccgcc
gaccaggccgccgatgccacgctcgcgacctccgtcgtcaccaacgatgccgcaccgtcc
acggacgtcgccgaaggcggcgaaggcggcgcacgccgtcgtcgcggccgtcgcggtggc
cgtcgtcgtcgtcgcggccagggcggcgcggaaggcgaagccacgcaggatggcatggcg
cacgagcacgaccaggaccacgatgacgtcgaaagcggcgacgtcgcggccaacacgcgc
gcgcagccggaattcgatttcgacgacgaagcgccggccgcaccgatcgcatcggcaccg
gtcgcgtcggcacgggccgcaacgcccgcaccgatcgccacgccggcaccgatcgccgcc
tccgcgccgaccgcgcctccggtcgcaacgcctgcgccggtcgccacgcctgccccgtac
gtcgcaccggcctcgcccgccgaccccgccgcggcgcccgcacgcgatgccgtcgccacg
ccggacgccttcgcgtccgcgccgatcgaagtcgaacccgcgcgcaccgatacggacacc
agccgccacacgctggcgaccgaatcgctcgcgagcgcgatcgagaacgcaccgggcgac
tggaacgacgcgccctacgccgacgtcgccacgcccgcgcaggccatcgacgaagtgaat
tcgccggagccgatcgaaccggcatcgacgtcgcgcgacatcgccgccacgcagccgccg
gcgttccaggagcccgcattcgaagaaccggccgccacgccgtcgaatgccgccgcgtat
gcaccgtcgttctcgcaggcagacccgcagcccgcgcaggccgaagacgtcgcgtcgttg
ttcggcgccgcgtcgccgtcgcagccctcgcccggcctgttcgatgccatgccgagcgaa
gaccccgcccaggccgcggcggatgcgatcgccgacgaacccgcggtcgacgacacgcac
gcgcgcgtcgccgaggccttcgaacccgaagccacgccgccgcacccgcagccgccgcac
gaagacgcgccgcgcaacgtgtga
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