Noviluteimonas caseinilytica: LYSCAS_30080
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Entry
LYSCAS_30080 CDS
T07541
Symbol
sbcB
Name
(GenBank) exodeoxyribonuclease I
KO
K01141
exodeoxyribonuclease I [EC:
3.1.11.1
]
Organism
lcas
Noviluteimonas caseinilytica
Pathway
lcas03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
lcas00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
LYSCAS_30080 (sbcB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lcas03400
]
LYSCAS_30080 (sbcB)
Enzymes [BR:
lcas01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.1 exodeoxyribonuclease I
LYSCAS_30080 (sbcB)
DNA repair and recombination proteins [BR:
lcas03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA exonucleases
LYSCAS_30080 (sbcB)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
LYSCAS_30080 (sbcB)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
LYSCAS_30080 (sbcB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Exonuc_X-T_C
RNase_T
Motif
Other DBs
NCBI-ProteinID:
BCT93984
LinkDB
All DBs
Position
3103420..3104862
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AA seq
480 aa
AA seq
DB search
MAASFLFYDLETFGADPRTTRIAQFAALRTDAELNAIDEPISFYVQPADDLLPSPVATLI
TGITPQHALREGVNEAAAFARIFEEMARPETCTLGYNSLRFDDEFVRAGLFRNFYDPYER
EWRNGNSRWDLLDVMRLAHALRPEGLEWPLRDDGFVSFRLEHLATANGVREGDAHEALSD
VVALVGLARRFRAAQPRLWDYALRLRDKRYVAQLLDPVRMQPVLHVSQRFPASRLCSAPV
LPIARHPQIDSRVIVFDLDQDPEALLTLDPEAIADHLYTPAADLPEGATRVALKEVHANK
CPVLVSWEHLRPNDFARLAIDRARSEANAQRLRDAGPALAEKVRQVYAASRSRAPSDVDG
SLYDGFLDEGDKRKFPTVRSLSPASLGTHDFAFRDPRMAELLFRYRARNWPGSLDAGERT
RWDDYRRDRLTRDTGRSEYTFDTFFAEIAALRTLNTEAPERLALLDALDAWGRERGHALA
NT seq
1443 nt
NT seq
+upstream
nt +downstream
nt
atggccgccagcttcctgttctacgacctggaaaccttcggcgccgatccgcgcaccacg
cggatcgcgcagttcgccgcgctgcgcaccgacgccgaactcaacgcgatcgacgaaccc
atcagcttctacgtgcagccggccgacgacctgctgccctcgcccgtcgccacgctgatc
accggcatcacgccgcagcatgcgttgcgcgaaggcgtgaacgaagcggccgcgttcgcg
cgcatcttcgaggagatggcacggccggaaacctgcacgctcggctacaactcgctgcgc
ttcgacgatgagttcgtgcgcgccggcctgttccgcaacttctacgatccctacgaacgc
gagtggcgcaacggcaacagccgctgggatttgctcgacgtgatgcgcctggcgcatgcg
ctgcggcccgagggcctcgaatggccgttgcgcgacgatggcttcgtgtcgttccgcctc
gaacacctcgccaccgccaacggcgtgcgcgaaggcgatgcgcatgaagccttgtcggac
gtcgtcgcgctcgtcgggctggcgcgccggttccgcgcggcgcaaccgcgcctgtgggat
tacgcgctgcgcctgcgcgacaagcgttacgtcgcgcagttgctcgatcccgtgcgcatg
caaccggtgctgcacgtgtcgcagcgttttccggccagtcgcctgtgcagcgcgcccgtg
ctgccgatcgcgcgccatccgcagatcgacagccgcgtgatcgtgttcgacctggaccag
gatcccgaggcgctgctgacactggatcccgaagcgatcgccgaccacctctacacgccc
gccgccgatttgcccgaaggcgcaacgcgcgtcgcgctgaaggaagtgcacgccaacaag
tgccccgtgctggtgtcgtgggagcacctgcgtccgaacgacttcgcgcgcctggccatc
gaccgcgcacgcagcgaggcgaacgcgcagcgcctgcgcgacgccggccccgcgctcgcg
gagaaagtgcggcaggtgtacgccgcgtcgcggtcgcgcgcgccctccgacgtcgacggc
tcgctctacgacggcttcctcgacgaaggcgacaagcgaaagttccccaccgtgcgctcg
ctgtcgccggcctcgctgggcacgcatgacttcgcgttccgcgatccgcgcatggccgaa
ctgctgttccgctaccgcgcgcgcaactggcccggctcgctcgatgccggtgaacgcacg
cgctgggacgactatcgtcgcgaccgcttgacgcgcgacacgggacgctccgagtacacc
ttcgacaccttcttcgcggagatcgccgcgttgcgcaccctgaacaccgaagcccccgag
cgcctggcgctgctcgacgccctggacgcctggggccgcgaacgcgggcacgccctggca
tga
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