Lemur catta (Ring-tailed lemur): 123626172
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Entry
123626172 CDS
T08326
Symbol
SMARCB1
Name
(RefSeq) SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1 isoform X1
KO
K11648
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1
Organism
lcat
Lemur catta (Ring-tailed lemur)
Pathway
lcat03082
ATP-dependent chromatin remodeling
lcat03250
Viral life cycle - HIV-1
lcat04714
Thermogenesis
lcat05225
Hepatocellular carcinoma
Brite
KEGG Orthology (KO) [BR:
lcat00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
123626172 (SMARCB1)
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
123626172 (SMARCB1)
09150 Organismal Systems
09159 Environmental adaptation
04714 Thermogenesis
123626172 (SMARCB1)
09160 Human Diseases
09162 Cancer: specific types
05225 Hepatocellular carcinoma
123626172 (SMARCB1)
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
lcat01009
]
123626172 (SMARCB1)
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lcat03021
]
123626172 (SMARCB1)
03036 Chromosome and associated proteins [BR:
lcat03036
]
123626172 (SMARCB1)
Protein phosphatases and associated proteins [BR:
lcat01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
123626172 (SMARCB1)
Transcription machinery [BR:
lcat03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
123626172 (SMARCB1)
SWI/SNF complex
123626172 (SMARCB1)
Chromosome and associated proteins [BR:
lcat03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
123626172 (SMARCB1)
PBAF complex
123626172 (SMARCB1)
SWI/SNF complex
123626172 (SMARCB1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SNF5
INI1_DNA-bd
DUF1679
Motif
Other DBs
NCBI-GeneID:
123626172
NCBI-ProteinID:
XP_045391042
LinkDB
All DBs
Position
21:complement(8405164..8442257)
Genome browser
AA seq
385 aa
AA seq
DB search
MMMMALSKTFGQKPVKFQLEDDGEFYMIGSEVGNYLRMFRGSLYKRYPSLWRRLATVEER
KKIVASSHGKKTKPNTKDHGYTTLATSVTLLKASEVEEILDGNDEKYKAVSISTEPPTYL
REQKAKRNSQWVPTLPNSSHHLDAVPCSTTINRNRMGRDKKRTFPLCFDDHDPAVIHENA
SQPEVLVPIRLDMEIDGQKLRDAFTWNMNEKLMTPEMFSEILCDDLDLNPLTFVPAIASA
IRQQIESYPTDSILEDQSDQRVIIKLNIHVGNISLVDQFEWDMSEKENSPEKFALKLCSE
LGLGGEFVTTIAYSIRGQLSWHQKTYAFSENPLPTVEIAIRNTGDADQWCPLLETLTDAE
MEKKIRDQDRNTRRMRRLANTAPAW
NT seq
1158 nt
NT seq
+upstream
nt +downstream
nt
atgatgatgatggcgctgagcaagaccttcgggcagaagcccgtcaagttccagctggag
gacgacggcgagttctacatgatcggctccgaggtgggaaactacctccgtatgttccga
ggttctctgtacaagagatatccctcactctggaggcgactagccactgtggaagagagg
aagaaaatagttgcatcgtcacatggtaaaaaaacaaaacctaacactaaggatcatgga
tacaccaccctagccaccagtgtgactctgctaaaagcctcagaggtggaggagattcta
gacggcaatgatgagaagtacaaggctgtgtccatcagcacggagccccccacctacctc
agagagcagaaggccaagaggaacagccagtgggtgcccaccctgcccaacagctcccac
cacctggacgccgtgccctgctccacgaccatcaacaggaaccgcatgggccgggacaag
aagaggaccttccccctgtgctttgatgaccatgacccagctgtgatccatgagaacgcg
tcccagcctgaggtgctggtccccatccggctggacatggagatcgatgggcagaagctg
cgggacgccttcacctggaacatgaatgagaagctgatgactcctgagatgttttcggaa
atcctctgtgacgacctggatttgaacccgctgacattcgtgccagccatcgcctcagcc
atcagacagcaaatcgagtcctaccccacagacagcatcctggaggaccagtcggaccag
cgcgtcatcatcaagctgaacatccacgtggggaacatatctctggtggaccagtttgag
tgggacatgtcggagaaggagaactcgccggagaagtttgccctgaagctgtgctcagag
ctggggctgggcggggagtttgtcaccaccatcgcatacagcatccggggacagctgagc
tggcatcagaagacctacgccttcagtgagaaccccctgcccacagtggagatcgccatc
cggaacacgggcgatgcggaccagtggtgcccactgttggagaccctcacagatgccgag
atggagaagaagatccgtgaccaggacaggaacacaaggcgtatgaggcgtctcgccaac
actgccccggcctggtaa
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