Lemur catta (Ring-tailed lemur): 123630822
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Entry
123630822 CDS
T08326
Symbol
COL18A1
Name
(RefSeq) LOW QUALITY PROTEIN: collagen alpha-1(XVIII) chain
KO
K06823
collagen type XVIII alpha
Organism
lcat
Lemur catta (Ring-tailed lemur)
Pathway
lcat04974
Protein digestion and absorption
Brite
KEGG Orthology (KO) [BR:
lcat00001
]
09150 Organismal Systems
09154 Digestive system
04974 Protein digestion and absorption
123630822 (COL18A1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
lcat04147
]
123630822 (COL18A1)
00535 Proteoglycans [BR:
lcat00535
]
123630822 (COL18A1)
00536 Glycosaminoglycan binding proteins [BR:
lcat00536
]
123630822 (COL18A1)
Exosome [BR:
lcat04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
123630822 (COL18A1)
Proteoglycans [BR:
lcat00535
]
Extracellular matrix (ECM) proteoglycans
Basement membrane proteoglycans
123630822 (COL18A1)
Glycosaminoglycan binding proteins [BR:
lcat00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
123630822 (COL18A1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Endostatin
Collagen
DUF959
Collagen_trimer
Fz
Laminin_G_3
Motif
Other DBs
NCBI-GeneID:
123630822
NCBI-ProteinID:
XP_045396795
LinkDB
All DBs
Position
1:285326048..285375622
Genome browser
AA seq
1756 aa
AA seq
DB search
MAPDLSGRLGLLLLTCCLAAARAQLLSLDWLWPSKVASPALQASEPKGHLPVQPTTHAAT
GDGSTERGAAPASPEPPPELLEGGRTGGPNAPPTPTATAALSPSAREENIAGVGAEILNV
AQGIRSFVQLWDDATPTESTAGVQTLAPEAPPGPPTRPGPSSAPREDGPALWPSSGAPWA
PGANTAGADMPPALTLAAPSRGSPQAPLREPSVPPRSPGRASLSSVLGGAPPWGSWLSPG
RPPDLDGEGRAPVAAGPGQWHPDVRRHTALLHPPVTGSLGAHAALSSDSDSPGARSRTAV
TALIGDAGAWVSHMADSVGPGLANHSAALGAGRCLPLPPSLPACGRLGIRRSWLPNHLQH
QRGEEVQAAAQAWGGLLRTRCHPFLAWFFCLLLAPPCGPAPPPAPPPCRQFCEALEDACW
RHLPRGRLPVACAALPAQEHGYCVFIGPAAESAGEELGLLQLLGEPLPPQVTQIDDPEVG
PAYAFGPGANSGQVARYHVPSPFFRDFSLLFHVRPATQGAGVLFAITDAAQAVVLLGVKL
SEVREGRQHIMLLYTEPGAGQTRTAASFRLPALVGRWTRFALSVDGGSVALYVDCEEFQR
TLLTRSSRGLELEPGAGLFVAQAGGADPDKFQGRIAELRVRGDPQVSTRHCLDEEDDDSD
GASGDFGSGLAENREPLGEDTGAAPKPGLPPPPPVTSPPLAGGGSMEGSRTDEIEDTTAA
SLGAHSLPGSGPLSTSDGTVRGPEGSPKEGGLKGQKGEPGAPGLPGSMGPPGPPCMIGPP
GPPCPFSPESPLGPVGPGAQSPHAQPVTGPQGPPGLPGKDGAPGRDGQPGNSGKDGKPGD
TGPQGFPGTPGDVGPKGEKGDPGVGTRGPPGPQGPPGPPGPAFRHDRLTFIDMEGSGFGG
DMETLRGPRGFPGPPGPPGVPGLPGEPGRFGVNSSDVPGPPGLPGVPGREGPPGFPGPPG
PPGAPGREGLPGRTGQKGGLGEAGTPGPKGSTGDPGPAGAPGESGVAGAPGPAGPPGPPG
PPGPPGPGFAAGFDDMEGSGAPLWSTARGSDGPQGRPGPPGLKGDPGTPGPPGAKGEVGA
DGAPGFPGLPGREGTAGPQGPKGDRGSRGEKGDPGKDGVGQPGLPGPPGPPGPVVYVSEQ
DGAVLSAPGPEGRPGLAGFPGPAGPKGNLGSKGERGFPGPKGEKGEPGSVFSPDGRAAPA
PKGAKSRGFRGPPGPYGRPGHKGEIGFPGRPGRPGMNGLKGEKGEPGEASVALGTRGMPG
PPGPPGPPGPPGTPLYDGNAFVESSRPGPPGLPGYQGPPGPKGDKGEVGPPGPAGQFPFD
LLHLEAEMKGEKGDRGDVGQKGERGEPGGGGFFGSSVPGPPGPPGPPGYPGIPGAKGESI
RGPPGPPGPQGPPGIGYEGRQGPPGPPGPPGPPSFPGPHRQTISVPGPPGPPGPPGPPGT
TGASSGVRMWATFQALLDQVHEVPEGWLMFVAEREELYVRVRDGFRKVRLEPRTPLPRGT
DNEVAALQPPVVQLHDSNPYPRREHPHSTARPWRADDILASPPRLPAPQPYPGAPHHGSY
VHLRPARPTGPPAHTHQDFQPVLHLVALNSPLSGGMRGIRGADFQCFQQARAAGLAGTFR
AFLSSRLQDLYSIVRRADRGAVPIVNLKDEVLFPSWEALFSGSQAQLKPGARIFSFDGRD
VLRHPAWPQKSVWHGSDPSGRRLTESYCETWRTEAPEATGQASSLLAGRLLGQQAASCRG
AYVVLCIENSFVSGSQ
NT seq
5271 nt
NT seq
+upstream
nt +downstream
nt
atggccccggacctcagcggccgcctgggcctgctgctgctcacctgctgccttgcggcc
gcccgggcccagctgctgagcctggactggctgtggcccagcaaggtcgccagccctgcg
ctccaggcctccgagcccaagggccaccttcctgtgcagcccaccacgcacgcggccacc
ggggatggctccacggagcgaggggcggcccccgccagccctgagccacccccggagctg
ctggagggtggccggactgggggccctaacgccccccccacccccaccgccacggctgcc
ctgagccccagcgcgagggaggagaacatcgccggggtcggagccgagatcctgaacgtg
gcccagggcatccggagcttcgtccagctgtgggatgatgccacccccaccgagagcaca
gccggggtgcagacactggcccccgaggcccccccgggcccccccacccggcctgggccc
tccagcgcccccagggaggacgggccggcgctctggccgagcagtggtgctccgtgggct
ccgggcgccaacacagccggggcggacatgccgcccgcactcaccctggccgccccctcc
cggggcagcccccaggcaccactcagggagccctcggtgccaccgcggtccccaggtaga
gcgtctctctcctccgtgctgggcggggctcctccctggggaagttggctgtcccccggg
cggcccccagatctggacggcgaaggacgcgcacccgtggcggccggtcccggccagtgg
caccctgacgtccgcaggcacacggcgcttctgcaccccccggtgacgggctccctgggc
gcacacgctgctctctcctctgactctgactctccgggcgcacggtctagaacagcagtc
acggctctaattggggacgccggggcttgggtttcccacatggccgactctgtggggcct
ggtcttgccaatcactccgctgctctgggtgccggccgctgcctgccgctgcccccctcg
ctgcccgcctgcggccgcctgggcatcaggcgctcctggctgcccaaccacctgcagcac
cagcgcggcgaggaggtgcaggccgccgcgcaggcatgggggggcctcctgcggacgcgc
tgccaccccttcctggcctggttcttctgcctgctgctggcccccccgtgcggcccggcc
ccgccgcccgcccccccgccctgccgccagttctgcgaggccctggaggacgcgtgctgg
cgccacctgcccaggggccggctgcccgtggcctgtgccgccctcccggcccaggagcac
gggtactgcgtgttcattggcccggctgcagagagcgctggcgaggagttggggctgctg
cagctcctcggggagccgctgcccccgcaggtcacccagatcgacgaccccgaggtcggg
ccggcctacgcattcgggccaggtgccaacagcggccaggtggcccgctaccacgtcccc
agccccttcttccgagacttctcgctgctgttccacgtccggccggccacgcagggcgcg
ggggtgctgttcgccatcacggacgcggcacaggccgtggtcttgctgggcgtgaagctc
tccgaggtgcgggagggccgccagcacatcatgctactgtacacggagccgggcgcgggc
cagacccgcacggctgccagcttccgcctgcccgccctggtcggccggtggacccgcttt
gcgctcagcgtggacggcggctccgtggcgctctacgtggactgcgaggagttccagagg
acgctgctcacacgatcctcgcggggcctggagctggagcccggcgccggcctctttgtg
gcccaggccggaggggcggaccccgacaagttccaggggaggatcgcggagctgagggtg
cgcggggacccccaggtgagcacccggcactgcctggacgaggaagacgatgactcggac
ggggcgtccggggacttcggcagtgggctcgcggagaaccgggagccgctcggggaggac
acaggcgcggccccaaaacccggcctccccccgcctcccccagtcacttccccgcccttg
gctggaggcggcagcatggaaggttccagaacggatgaaattgaagacaccacagcagct
tcattaggagcgcacagcctgcctggctcaggtccactttccacgagcgacgggacagtc
cggggccctgagggctccccgaaggagggaggcctgaaggggcagaagggggagccgggg
gctccgggcctgcctggctccatgggacccccaggccccccgtgcatgatcggccccccg
ggccccccgtgcccgttcagccccgagagtcccctgggtcctgtgggtccaggggcacag
agcccgcacgcgcagcctgtcactgggccacagggacccccggggctgccagggaaggac
ggcgccccaggaagggatggccagccgggcaactccggtaaagacggaaaacccggtgac
actgggccacagggctttccagggaccccaggagatgtgggccccaagggcgagaagggg
gatcctggggttgggacaagaggacccccaggaccccaggggccaccagggccaccagga
cctgccttcagacacgacaggctgaccttcattgacatggaggggtccggcttcggtggt
gacatggagaccctccggggcccgcgaggcttccccggcccccctggcccccccggcgtc
ccaggcctgcccggcgagccaggccggtttggggtgaacagctccgatgtcccaggaccc
ccaggtcttcctggtgtgcctggacgggaggggccccccggattccccggccccccgggg
ccccccggtgctccaggcagagaggggctgccaggaaggaccgggcagaaaggcggcctc
ggtgaagccggcaccccaggacccaagggaagcacgggagaccctggtcccgctggcgct
cccggggagagcggcgtggcaggagcccctgggccagctggaccgccgggaccccctggg
ccccccggacccccaggaccaggatttgcagctgggtttgacgacatggaaggctccggg
gctcctctctggtcgacggcccgaggctccgacgggccacagggacggcctggcccgccc
ggactcaagggggaccccgggacgcctgggccacccggggccaagggagaagtcggagcg
gatggggcccctgggttccccggcctccccggcagagagggcaccgccgggccccaggga
ccgaaaggggacagagggagccggggagaaaaaggcgacccagggaaggacggagtgggg
cagcccggcctccccgggccccccggaccaccagggcccgtggtctacgtgtcggagcag
gacggagccgtgctgagcgcgccagggcccgagggcaggccggggctcgcaggcttcccc
ggacccgccgggcccaagggtaacctgggctccaagggcgagcgaggcttcccgggaccc
aagggtgagaagggcgagcctggcagtgtcttcagccccgacggcagagccgcccctgcc
ccaaaaggagcgaagagccggggcttccgaggacccccgggcccgtatgggcggccgggg
cacaagggggagattggctttcctggacggccgggtcgccccgggatgaacggactgaaa
ggagagaaaggggagccgggagaggccagcgtggcgttgggcacgaggggaatgcccggc
ccccctgggcctccgggccccccaggccctcctgggactcctctctacgatggcaacgcg
tttgtggagtccagccgccctgggcctccaggactgccaggataccaggggcctcctgga
ccaaagggtgacaagggagaagtgggcccacccggaccagcagggcagttcccgttcgac
ctcctgcacttagaggctgaaatgaagggggagaaaggagaccgcggggacgtcggacag
aaaggagagaggggtgagcccgggggcggcggcttcttcggctccagtgtgccgggcccc
cctggccccccaggcccgcccggctacccagggatcccgggtgccaaaggagagagtatc
cggggcccacccggcccacctggacctcagggaccccccggcatcggctacgaggggcgc
cagggcccccccggcccaccaggccctccagggcccccttcatttcccggcccccacagg
cagactatcagcgttcccggcccccctggcccccccgggccaccaggacctcctggaacc
actggtgcctcctcaggggtgaggatgtgggccacgttccaggccctgctggaccaggtg
cacgaggttcccgagggctggctcatgttcgtggccgagcgcgaggagctctacgtccgg
gtccgggacgggttccggaaggtccggctggagccccggacgccactcccgcgggggacg
gacaacgaggtggccgccctgcagccccccgtggtgcagctgcacgacagcaacccatac
ccccggcgggagcacccccactccacggcgcggccctggcgggcggacgacatcctggcc
agccccccgcgcctgccggccccccagccctaccccggagccccgcaccacggctcctac
gtgcacctccggccggcgcgccccacgggccccccagcgcacacccaccaggacttccag
ccggtgcttcacctggtcgcgctcaacagcccgctgtcgggcggcatgcgcggcatccgc
ggggccgacttccagtgcttccagcaggcgcgggcagcggggctggctggcaccttccgg
gccttcctgtcctcgcggctgcaggacctctacagcatcgtgcgccgtgctgaccgcggg
gccgtgcccatcgtcaacctcaaggacgaggtgctgtttcccagctgggaggccctgttc
tcgggctcccaggcccagctgaagcccggcgcccgcatcttctccttcgacggcagagac
gtcctgagacacccggcctggccccagaagagcgtgtggcacggctcggaccccagcggg
cgccggctgacagagagctactgtgagacgtggcggacagaggcccccgaggccacgggc
caggcgtcctcgctgctggcgggcaggctgctgggccagcaggccgcgagctgccgcggc
gcctacgtcgtgctctgcatcgagaacagctttgtgagcggctcccagtag
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