Lemur catta (Ring-tailed lemur): 123630829
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Entry
123630829 CDS
T08326
Symbol
COL6A1
Name
(RefSeq) LOW QUALITY PROTEIN: collagen alpha-1(VI) chain
KO
K06238
collagen type VI alpha
Organism
lcat
Lemur catta (Ring-tailed lemur)
Pathway
lcat04151
PI3K-Akt signaling pathway
lcat04510
Focal adhesion
lcat04512
ECM-receptor interaction
lcat04518
Integrin signaling
lcat04820
Cytoskeleton in muscle cells
lcat04974
Protein digestion and absorption
lcat05165
Human papillomavirus infection
Brite
KEGG Orthology (KO) [BR:
lcat00001
]
09130 Environmental Information Processing
09132 Signal transduction
04151 PI3K-Akt signaling pathway
123630829 (COL6A1)
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
123630829 (COL6A1)
04518 Integrin signaling
123630829 (COL6A1)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
123630829 (COL6A1)
09142 Cell motility
04820 Cytoskeleton in muscle cells
123630829 (COL6A1)
09150 Organismal Systems
09154 Digestive system
04974 Protein digestion and absorption
123630829 (COL6A1)
09160 Human Diseases
09172 Infectious disease: viral
05165 Human papillomavirus infection
123630829 (COL6A1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
lcat04147
]
123630829 (COL6A1)
00536 Glycosaminoglycan binding proteins [BR:
lcat00536
]
123630829 (COL6A1)
Exosome [BR:
lcat04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
123630829 (COL6A1)
Glycosaminoglycan binding proteins [BR:
lcat00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
123630829 (COL6A1)
Hyaluronan
Extracellular matrix or blood plasma proteins
123630829 (COL6A1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
VWA
Collagen
VWA_2
VWA_3
Motif
Other DBs
NCBI-GeneID:
123630829
NCBI-ProteinID:
XP_045396813
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All DBs
Position
1:285729672..285748589
Genome browser
AA seq
1032 aa
AA seq
DB search
MRLARTLLPLLLQACWVAWVAAQDEPEATRAIAFQDCPVDLFFVLDTSESVALRLKPYGA
LVDKVKAFTKRFIDNLQDRYYRCDRSLVWNAGALHYSDEVEIISGLTRMPAGRDALKASV
DAVKYFGKGTYTDCAIKKGLEELLVGGSHLKENKYLIVVTDGHPLEGYKEPCGGLEDAVN
EAKHLGVKVFSVAITPDHLEPRLSIIATDHSYRRNFTAADWGQSRDAEEVIAQTIETITD
MIKNNVEQVCCSYECQPARGPPGLRGDPGYEGERGKPGLPGEKGEAGDPGRPGDLGQSGT
RAXRERRGTRGEKGSRGPKGYKGEKGKRGIDGVDGTKGETGYPGLPGCKGSAGFDGIQGP
PPAPKGDAGAFGLKGEKGQPGADGEAGRPGNSGPPGDEGEPGEPGPPGEKGEAGDEGNPG
PDGAPGERGGPGERGPRGTPGTRGPRGDPGEAGPQGDQGREGPAGVPGDPGEAGPVGAKG
YRGDEGPPGPEGPQGAPGPAGPPGDPGLMGERGEDGPPGNGTEGFPGFPGYPGSRGPPGI
NGTKGYPGLKGDEGEAGDPGDDNNDVSPRGAKGAKGYRGPEGPQGPPGHVGPPGPDECEI
LDIIMKMCSCCECKCGPIDILFVLDSSESIGLQNFEIAKDFITRVIDRLSRDELVKFEPG
QSHAGVVQYSHNQMQEHVDLRSPNIRNAQELKEAIKKLQWMAGGTFTGEALQYTRDRLLP
PTQNTRVALVITDGRSDTQRDTTPLNVLCGPDIQVVSVGIMDVFDFVPSPDQLNVISCQG
LASTQGRPGLSLVKENYAELLEDAFLKNITAQICIDKKCPDYTCPITFSAPADITILLDG
SASVGSHNFDITKRFAKRLAERFLSAGRTDPAADVRVAVVQYSGTGQQRPERAALQFLQN
YTVLAGVVDGMAFLNDATDVTDALSYVTRFYREASPGPAKKRLLLFSDGNSQGATPAAIE
KAVQEAQRAGIEVFVVVVGRQVNEPHIRVLVTGKTAEYDVAFGERHLFRVPSYQALLRGV
FHQTVSRKVALG
NT seq
3099 nt
NT seq
+upstream
nt +downstream
nt
atgaggctggcccgcacgctgctccccctgctgctgcaggcctgctgggtggcctgggtg
gccgcacaggacgagccggaggccaccagggccatcgccttccaggactgccccgtggac
ctgttcttcgtgctggacacctccgagagcgtggccttgaggctgaagccctacggggcc
ctggtggacaaggtcaaggccttcaccaagcgcttcatcgacaacctgcaggacaggtac
taccgctgcgaccgcagcctggtgtggaacgcgggcgcgctgcactacagcgacgaggtg
gagatcatcagcgggctcacgcgcatgcccgcgggccgcgacgcgctcaaggccagcgtg
gacgcggtcaagtacttcggcaagggcacctacaccgactgcgccatcaagaaggggctg
gaggagctgctggtggggggctcccacctgaaggagaacaagtacctgatcgtggtgacc
gatggccaccccctggagggctacaaggagccgtgcgggggcctggaggacgcggtgaac
gaggccaagcacctgggcgtcaaagtcttctcagtggccatcacgccagaccacctggag
ccacgtctgagcatcatcgccacggaccactcgtaccggcgcaacttcaccgcggccgac
tgggggcagagccgcgacgcggaggaggtcattgcccaaaccatcgagaccatcacggac
atgatcaaaaataacgtggagcaagtgtgctgttcctacgagtgccagcccgccagagga
cctccagggctccggggcgaccccgggtacgagggagaacgcggcaagcccgggctccca
ggagagaagggagaagctggagaccccggaaggcccggggacctcggacagtcgggtacc
agggcatgaagggagagaaggggaacccgcggggagaagggctccaggggacccaagggc
tacaagggcgagaagggcaagcgcggcatcgacggggtggacggcacgaagggggagacg
gggtacccaggcctgccaggctgcaagggctcggccggattcgacggcattcaaggaccc
cccccggcccccaagggcgacgccggcgcctttggactgaaaggggagaagggccagccc
ggagccgacggcgaggccgggagacctgggaactcggggccgcctggagacgagggcgag
ccgggagagccgggccccccaggagagaaaggagaagccggcgatgaggggaacccggga
cctgacggtgcccccggagagaggggtggccctggagaaagaggaccccgggggacccca
ggcacgcgggggccgcgaggagacccgggtgaagctggaccccaaggcgaccagggaaga
gaaggcccggctggcgtccccggagacccgggcgaggctggccccgttggagctaaaggt
taccgcggcgacgagggtccccccgggcctgagggcccccaaggagccccaggacccgcc
gggccccccggagaccccgggctgatgggcgaaaggggtgaagacggcccccccggaaac
ggcaccgagggcttccccggcttccccggctacccgggcagcaggggccctcctgggata
aacggcaccaagggctacccaggcctcaagggggacgagggtgaagccggggaccctgga
gatgacaacaatgacgtttcgccccgaggtgccaaaggagcgaaggggtaccggggcccc
gaaggcccccaggggcccccaggacacgtgggaccgcccgggccggacgagtgcgagatt
ctggacatcatcatgaaaatgtgctcttgctgcgagtgcaagtgcggccccatcgacatc
ctgttcgtgctggacagctccgagagcatcggcctgcagaacttcgagatcgccaaggac
ttcatcaccagggtcatcgaccggctgagcagggacgagctggtcaagtttgagccgggg
cagtcgcacgcgggcgtggtgcagtacagccacaaccagatgcaggagcacgtggacctg
cggagccccaacatcaggaacgcgcaggagctcaaggaagccatcaagaagctgcagtgg
atggcgggcggcacgttcacgggcgaggccctgcagtacacccgggaccggctgctgccg
cccacccagaacacacgcgtcgcgctggtgatcacggacgggcgctcggacacgcagcgg
gacaccacgcccctcaacgtgctctgcggccccgacatccaggtggtctccgtgggcatc
atggacgtgttcgacttcgtccccagccccgaccagctcaacgtcatctcctgccaaggc
ctggcgtcgacgcagggccggcccggcctgtcgctggtcaaggagaactacgcggagctg
ctggaggacgccttcctcaagaacatcacggcccagatctgcatagataagaagtgcccg
gactacacctgcccgatcacgttctccgccccggctgacatcaccatcctcctggacggc
tcggccagcgtgggcagccacaacttcgacatcaccaagcgcttcgccaagcggctggcc
gagcgcttcctgagcgcgggcaggacggaccccgccgcggacgtgcgcgtcgccgtggtg
cagtacagcggcacgggccagcagaggccggagcgcgcggcgctgcagttcctgcagaac
tacacggtgctggccggcgtcgtggacggcatggccttcctcaacgacgccaccgacgtc
accgacgccctgagctacgtgacccgcttctaccgcgaggcctcgcccggcccagccaag
aagcggctgctgctcttctcggacggcaactcgcagggcgccacgccggcagccatcgag
aaggccgtgcaggaggcccagcgggcgggcatcgaggtcttcgtggtggtggtgggccgc
caggtgaacgagccgcacatccgcgtcctggtcaccggcaagacggccgagtacgacgtg
gcgttcggcgagcgccacctgttccgtgtgcccagctaccaggccctgctgcggggcgtc
ttccaccagacggtctccaggaaggtggcgctgggctag
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