Lemur catta (Ring-tailed lemur): 123635860
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Entry
123635860 CDS
T08326
Symbol
SNRNP40
Name
(RefSeq) U5 small nuclear ribonucleoprotein 40 kDa protein
KO
K12857
Prp8 binding protein
Organism
lcat
Lemur catta (Ring-tailed lemur)
Pathway
lcat03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
lcat00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
123635860 (SNRNP40)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
lcat03041
]
123635860 (SNRNP40)
Spliceosome [BR:
lcat03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
123635860 (SNRNP40)
Complex C
U5 SnRNP specific factors
123635860 (SNRNP40)
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Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
WD40_WDHD1_1st
WD40_CDC20-Fz
Beta-prop_TEP1_2nd
EIF3I
Beta-prop_CAF1B_HIR1
Beta-prop_EML_2
WDR55
WD40_MABP1-WDR62_2nd
Beta-prop_WDR90_POC16_2nd
Beta-prop_TEP1_C
Beta-prop_WDR75_1st
Beta-prop_EML
NBCH_WD40
WDR90_beta-prop_4th
Beta-prop_EIPR1
WD40_MABP1-WDR62_1st
Beta-prop_SCAP
ANAPC4_WD40
Beta-prop_SPT8
Beta-prop_IFT122_1st
Beta-prop_DCAF4
Beta-prop_RIG_2nd
WD40_RFWD3
Beta-prop_IFT140_1st
Beta-prop_WDR75_2nd
Beta-prop_WDR19_1st
Beta-prop_Vps41
eIF2A
Beta-prop_WDR35_TULP_N
Beta-prop_NWD2_C
Beta-prop_RIG_1st
Cytochrom_D1
WDR54
WD40_like
Beta-prop_Nup120_160
Motif
Other DBs
NCBI-GeneID:
123635860
NCBI-ProteinID:
XP_045404398
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All DBs
Position
3:104406583..104430443
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AA seq
358 aa
AA seq
DB search
MIEQQKRKGPELPLVPVKRQRHELLLGAAGSGPGAGQQQATPGALLQAGPPRCSSLQAPI
MLLSGHEGEVYCCKFHPNGSTLASAGFDRLILLWNVYGDCDNYATLKGHSGAVMELHYNT
DGSMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQLVCTGSDDGTVKLW
DIRKKAAIQTFQNTYQVLAVTFNDTSDQIISGGIDNDIKVWDLRQNKLTYTMRGHADSVT
GLSLSSEGSYLLSNAMDNTVRVWDVRPFAPKERCVKIFQGNVHNFEKNLLRCSWSPDGSK
IAAGSADRFVYVWDTTSRRILYKLPGHAGSINEVAFHPEEPIILSASSDKRLYMGEIQ
NT seq
1077 nt
NT seq
+upstream
nt +downstream
nt
atgatagaacagcagaagcgtaagggcccagaattgccactggtcccggttaagcggcag
cggcatgaattgctgttgggagcggcggggtcgggcccgggagcggggcagcagcaggcg
acgccgggagctttgctgcaagcggggcctccaaggtgttcctcccttcaagccccaatc
atgctgctgtcaggacatgaaggagaagtatactgctgcaagtttcaccccaatggatcc
accttagcatctgcaggatttgaccgactgatactgttgtggaatgtctatggtgactgt
gataactatgccacattgaagggacacagtggagcagtgatggaactgcattataacaca
gacggcagtatgctcttctcagcatccacagataaaactgtggcagtgtgggatagtgaa
acaggcgagagggttaaaaggctaaagggacatacttccttcgtgaattcctgttatcca
gccaggaggggcccccagcttgtctgcactggcagtgatgatggtacagttaagctttgg
gacatccggaagaaagcagccattcaaacatttcagaacacataccaggtgttagctgtg
accttcaatgatacaagtgatcagattatttctggtggaatagacaacgatatcaaggtt
tgggacctgcgccaaaacaagctgacttacaccatgagaggccatgcagattctgtgact
ggcctgagtttaagttctgaaggctcttatctcttgtccaatgcaatggacaatacagtt
cgtgtctgggatgtccggccatttgcccccaaggagaggtgtgtgaagatatttcaagga
aatgtacacaactttgaaaagaatcttctgagatgttcttggtcacctgatggaagcaaa
atagcagctggctcagctgacaggtttgtgtatgtgtgggataccaccagcaggagaata
ttgtataagctgcctggccatgctggctccatcaatgaagtggctttccaccccgaagag
ccaatcattctctcagcatccagtgacaagagactatacatgggtgagattcagtga
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