Lemur catta (Ring-tailed lemur): 123637204
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Entry
123637204 CDS
T08326
Symbol
SNRNP200
Name
(RefSeq) U5 small nuclear ribonucleoprotein 200 kDa helicase
KO
K12854
pre-mRNA-splicing helicase BRR2 [EC:
5.6.2.6
]
Organism
lcat
Lemur catta (Ring-tailed lemur)
Pathway
lcat03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
lcat00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
123637204 (SNRNP200)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
lcat03041
]
123637204 (SNRNP200)
Enzymes [BR:
lcat01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
123637204 (SNRNP200)
Spliceosome [BR:
lcat03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
123637204 (SNRNP200)
Complex C
U5 SnRNP specific factors
123637204 (SNRNP200)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sec63
WHD_SNRNP200
DEAD
Helicase_PWI
ResIII
Helicase_C
BRR2_plug
AAA_22
AAA_30
PhoH
SWI2_SNF2
DUF603
Motif
Other DBs
NCBI-GeneID:
123637204
NCBI-ProteinID:
XP_045406079
LinkDB
All DBs
Position
4:complement(71135507..71162993)
Genome browser
AA seq
2136 aa
AA seq
DB search
MADVTARSLQYEYKANSNLVLQADRSLIDRTRRDEPTGEVLSLVGKLEGTRMGDKAQRTK
PQMQEERRAKRRKRDEDRHDINKMKGYTLLSEGIDEMVGIIYKPKTKETRETYEVLLSFI
QAALGDQPRDILCGAADEVLAVLKNEKLRDKERRKEIDLLLGQTDDTRYHVLVNLGKKIT
DYGGDKEIQNMDDNIDETYGVNVQFESDEEEGDEDVYGEVREEASDDDMEGDEAVVRCTL
SANLVASGELMSSKKKDLHPRDIDAFWLQRQLSRFYDDAIVSQKKADEVLEILKTASDDR
ECENQLVLLLGFNTFDFIKVLRQHRMMILYCTLLASAQSVAEKERIMGKMEADPELSKFL
YQLHETEKEDLIREERSRRERVRQSRMDTDLETMDLDQGGEALAPRQVLDLEDLVFTQGS
HFMANKRCQLPDGSFRRQRKGYEEVHVPALKPKPFGSEEQLLPVEKLPKYAQAGFEGFKT
LNRIQSKLYRAALETDENLLLCAPTGAGKTNVALMCMLREIGKHINMDGTINVDDFKIIY
IAPMRSLVQEMVGSFGKRLATYGITVAELTGDHQLCKEEISATQIIVCTPEKWDIITRKG
GERTYTQLVRLIILDEIHLLHDDRGPVLEALVARAIRNIEMTQEDVRLIGLSATLPNYED
VATFLRVDPAKGLFYFDNSFRPVPLEQTYVGITEKKAIKRFQIMNEIVYEKIMEHAGKNQ
VLVFVHSRKETGKTARAIRDMCLEKDTLGLFLREGSASTEVLRTEAEQCKNLELKDLLPY
GFAIHHAGMTRVDRTLVEDLFADKHIQVLVSTATLAWGVNLPAHTVIIKGTQVYSPEKGR
WTELGALDILQMLGRAGRPQYDTKGEGILITSHGELQYYLSLLNQQLPIESQMVSKLPDM
LNAEIVLGNVQNAKDAVNWLGYAYLYIRMLRSPTLYGISHDDLKGDPLLDQRRLDLVHTA
ALMLDKNNLVKYDKKTGNFQVTELGRIASHYYITNDTVQTYNQLLKPTLSEIELFRVFSL
SSEFKNITVREEEKLELQKLLERVPIPVKESIEEPSAKINVLLQAFISQLKLEGFALMAD
MVYVTQSAGRLMRAIFEIVLNRGWAQLTDKTLNLCKMIDKRMWQSMCPLRQFRKLPEEVV
KKIEKKNFPFERLYDLNHNEIGELIRMPKMGKTIHKYVHLFPKLELSVHLQPITRSTLKV
ELTITPDFQWDEKVHGSSEAFWILVEDVDSEVILHHEYFLLKAKYAQDEHLITFFVPVFE
PLPPQYFIRVVSDRWLSCETQLPVSFRHLILPEKYPPPTELLDLQPLPVSALRNSAFESL
YQDKFPFFNPIQTQVFNTVYNSDDNVFVGAPTGSGKTICAEFAILRMLLQNSEGRCVYIT
PMEALAEQVYMDWYEKFQDRLNKKVVLLTGETSTDLKLLGKGNIIISTPEKWDILSRRWK
QRKNVQNINLFVVDEVHLIGGENGPVLEVICSRMRYISSQIERPIRIVALSSSLSNAKDV
AHWLGCSATSTFNFHPNVRPVPLELHIQGFNISHTQTRLLSMAKPVYHAITKHSPKKPVI
VFVPSRKQTRLTAIDILTTCAADIQRQRFLHCTEKDLIPYLEKLSDSTLKETLLNGVGYL
HEGLSPMERRLVEQLFSSGAIQVVVASRSLCWGMNVAAHLVIIMDTQYYNGKIHAYVDYP
IYDVLQMVGHANRPLQDDEGRCVIMCQGSKKDFFKKFLYEPLPVESHLDHCMHDHFNAEI
VTKTIENKQDAVDYLTWTFLYRRMTQNPNYYNLQGISHRHLSDHLSELVEQTLSDLEQSK
CISIEDEMDVAPLNLGMIAAYYYINYTTIELFSMSLNAKTKVRGLIEIISNAAEYENIPI
RHHEDNLLRQLAQKVPHKLNNPKFNDPHVKTNLLLQAHLSRMQLSAELQSDTEEILSKAI
RLIQACVDVLSSNGWLSPALAAMELAQMVTQAMWSKDSYLKQLPHFTSEHIKRCTDKGVE
SVFDIMEMEDEERNALLQLTDSQIADVARFCNRYPNIELSYEVVDKDSIRSGGPVVVLVQ
LEREEEVTGPVIAPLFPQKREEGWWVVIGDAKSNSLISIKRLTLQQKAKVKLDFVAPATG
AHNYTLYFMSDAYMGCDQEYKFSVDVKEAETDSDSD
NT seq
6411 nt
NT seq
+upstream
nt +downstream
nt
atggcggacgtgaccgcccgtagcctgcagtacgagtacaaggcgaactccaatcttgta
ctccaagctgaccgatctctcattgaccgcacccgccgggatgaacccacaggagaggta
ttgtccctggttgggaagctggagggcacccgtatgggagataaggcccaacgaaccaaa
ccacagatgcaggaggaaagacgagccaagcgaagaaagcgtgacgaagaccggcacgac
atcaacaagatgaagggttatactctgctgtcggagggcattgatgagatggtcggtatc
atctataagcccaaaactaaggagactcgggagacctatgaagtgctgctcagcttcatc
caggctgctcttggggaccagccacgtgatatcctttgtggggcagctgatgaagttctg
gctgtcctaaagaatgaaaagctgcgggacaaggaaaggcgaaaggagattgacctgctg
ctgggtcaaacagatgataccagataccatgtgctagtgaacttggggaagaagatcaca
gactatggtggagacaaggaaatccaaaatatggatgacaacattgatgagacgtatggt
gtgaatgtgcagtttgagtctgatgaggaggaaggtgatgaagatgtgtatggggaagtt
cgggaagaggcatctgatgatgacatggaaggggacgaggctgttgtgcgctgcaccctc
tcagctaatcttgtagcctcaggtgaactgatgagttccaagaagaaggatttgcaccct
cgggatattgatgcattttggctgcagcggcagctcagccgtttctatgatgatgccatc
gtgtcacagaagaaggcagatgaagtgttagagattttgaagacggccagtgatgatcgg
gaatgtgagaaccagctggttctgctccttggtttcaacactttcgattttattaaagtg
ttgcggcagcacaggatgatgattttatactgtaccttgctggccagtgcacagagtgta
gctgaaaaggaaaggatcatgggaaagatggaagccgatccagagctatccaagtttctc
taccagctccacgagacagagaaagaggatctgattcgagaggaaaggtcccggagagag
cgagtgcgtcagtcccgaatggacacagatctggaaaccatggatttggaccagggtgga
gaggcactggctccacggcaggttctggacttagaggatctggtttttacccaagggagc
cacttcatggccaataaacgctgtcagcttcctgatgggtccttccgtcgccagcgtaag
ggctatgaagaggtgcatgttcctgctctgaagcccaagccctttggctcagaagaacaa
ctgcttccggtagaaaagctgccgaagtatgcccaggctggatttgagggcttcaaaaca
ctgaatcggatccagagtaaactctaccgcgctgccttggagacagatgagaacctgctg
ctgtgtgctcctaccggtgctgggaagaccaacgtggctctgatgtgtatgcttcgtgaa
atagggaaacacataaacatggatggcacaatcaatgtggatgacttcaagattatctac
attgctcccatgcggtccttggtgcaggagatggtgggcagttttggaaagcgcctggcc
acttacggcatcactgttgctgaactgactggagaccaccagctgtgcaaggaagagatc
agcgccactcagatcatcgtctgcacccctgagaagtgggatatcattacccgcaagggt
ggcgaacgcacctacactcagctagtgcggctcatcattctggatgaaatccatcttctt
cacgatgacagagggcctgtcttagaagctttggtggccagggccatccgaaacattgag
atgacccaagaggatgtccgactcattggtctcagtgccaccctccccaactatgaagat
gtggctacctttctgcgtgttgaccctgccaagggcctcttctactttgacaatagcttc
cgcccagtgcctctggaacagacttatgtgggcatcacagagaagaaagctatcaagcgt
ttccagatcatgaatgaaatagtctatgagaaaatcatggaacatgctggaaaaaatcag
gtgcttgtgtttgtccactcccggaaggagactgggaagacagccagggccatccgggac
atgtgcctagagaaggacactctgggtctgtttctgagagagggctcagcctccacggaa
gtcctgcggacggaagctgagcaatgcaagaacctggagctgaaggatcttctgccatac
ggcttcgccattcatcacgcaggcatgaccagagttgaccgaacacttgtggaggatctt
tttgctgataaacatattcaggttttagtttccacagcaactctggcttggggtgtaaat
cttcctgcacacactgtcatcatcaaaggcacccaggtgtacagtccagagaaggggcgc
tggacagaactgggagccctggacattctgcagatgctgggacgtgctggacgaccccag
tatgacaccaagggtgaaggcatactcatcacatctcatggggaactacagtactacctg
tccctcctcaatcagcaacttcctattgagagccagatggtgtcaaagcttcccgacatg
ctcaatgcagaaatcgtgctggggaatgtccagaatgcaaaggatgcagtgaactggctg
ggctatgcctacctgtacatccgaatgctccgatctccaaccctctatggcatctctcac
gatgacctcaagggagatcccctgctggaccagcgccgactagatctggttcacactgct
gccttgatgctggacaaaaacaatctggtcaagtatgacaagaagacgggcaacttccag
gtgacagaactgggccggatagccagccactactacatcaccaatgatacagtgcagacc
tacaaccagctgctgaagcccaccctgagtgagattgagcttttcagagtcttctctttg
tcctctgagtttaagaacatcactgtgagagaggaggagaagcttgagctgcagaagttg
ctggagagggtgcccatcccagtaaaggagagcattgaggaacccagtgcaaagatcaat
gtgcttctccaagccttcatctcgcagctgaaactggagggctttgcactgatggccgac
atggtgtatgttacacagtcggctggccggctgatgcgtgcgatctttgaaattgtcctg
aaccgaggttgggcccagcttacagacaagaccctgaacctctgcaagatgatcgacaaa
cgcatgtggcagtccatgtgtcctttgcgccagttccgcaaactccctgaggaagtagtg
aagaagattgaaaagaaaaacttcccgtttgagcgtctgtatgacctgaatcataatgag
ataggggagcttatccgcatgccgaagatggggaagaccatccacaaatacgtccacctg
tttcccaagttggagttgtcagtgcacctgcagcctatcacgcgttccaccctgaaagtg
gagctgaccatcacgccggatttccagtgggatgaaaaggtgcatggctcatctgaggca
ttctggattctggtggaggatgtggacagtgaggtgattctgcaccatgagtatttcctc
ctcaaggccaagtacgcccaggatgagcacctcattacgttcttcgttcctgtctttgaa
ccgctgccccctcagtacttcatacgagtggtgtctgaccgctggctctcttgtgagacc
cagctgcctgtctccttccggcacctgatcctaccagagaagtacccacctccaactgaa
cttttggacctgcagcccttgcctgtgtctgctctgagaaacagtgcctttgagagcctt
taccaagataaatttcctttcttcaatcctatccagacccaagtatttaacaccgtgtac
aacagtgatgacaatgtgtttgtgggggcccccacgggcagcgggaagactatctgtgca
gaatttgccatcctgcggatgctgctgcagaactcggaggggcgctgtgtctacattacc
cccatggaggcccttgcagagcaggtatacatggactggtatgagaagttccaggacagg
ctcaacaagaaggtggtgctcctgacgggagagaccagcacggacctgaagctgctgggc
aaaggcaacatcatcatcagcacccctgagaaatgggacatactttcccggcggtggaag
cagcgcaagaatgtccagaatatcaacctctttgtggtggatgaggtccaccttattggg
ggcgaaaatgggcctgtcttagaagtgatatgctcccggatgcgctacatctcctcccag
attgagcggcccatccgcattgtggcacttagctcctcgctctcgaatgctaaggacgtg
gcccactggctgggttgcagtgctacctccactttcaacttccaccctaatgtgcgccct
gttcctttggagctgcacatccagggattcaacattagccatacacaaactcgcctgctc
tccatggctaagcctgtataccatgctatcaccaagcactcgcccaagaagcccgtcatt
gtctttgtcccgtctcgcaagcagacccgcctcactgccattgacatccttaccacatgt
gcggctgacatccagcggcagaggttcttgcactgcaccgagaaggatctgatcccatac
ctggagaagctaagtgacagcacgctcaaggaaacactgttaaatggggtgggctacctg
catgaagggctcagccccatggagcgacgcctggtggaacagctcttcagctcaggtgct
atccaggtggtggtggcttctcggagtctctgctggggcatgaatgtggctgcccacctt
gtgatcatcatggacacccagtactacaatggcaagatccatgcctatgtggattacccc
atctatgatgtgcttcagatggtgggccacgccaaccgccccctgcaggacgatgagggg
cgctgtgttatcatgtgtcagggctccaaaaaggatttcttcaaaaagttcttatatgag
ccattgccagtagaatctcacctggatcactgtatgcatgaccacttcaatgctgagatt
gtcaccaagaccattgagaacaagcaggatgctgtggactacctcacctggacctttctg
taccgccgtatgacacagaaccccaattattacaacctgcagggcatttcccatcgtcac
ttgtccgaccacttgtcagagctggtggagcagaccctgagtgacctggagcagtctaag
tgtatcagcattgaggatgagatggacgtggcacccctgaacctgggcatgattgcggcc
tactattacatcaactacaccaccattgagctcttcagcatgtccctgaatgccaagacc
aaggtgcgagggcttatcgagatcatctccaatgcggcagagtatgagaatattcccatc
cggcaccatgaagacaacctcctgcggcagttggctcagaaggtcccccacaagctgaat
aaccctaagttcaatgatccgcatgtcaagaccaacctgcttctgcaggctcacctgtcc
cgcatgcagctgagtgctgagctgcagtcagatacagaggaaatccttagtaaggcaatc
cggctcatccaggcctgtgtggacgtcctctccagcaatgggtggctcagccctgctctg
gcagccatggaactggcccagatggttacccaagccatgtggtccaaggattcatacctg
aaacagctgccacacttcacttcagagcatatcaaacgttgcacagacaagggggtggag
agtgttttcgacatcatggagatggaggatgaggaacggaatgcattgcttcagctgact
gacagccagatcgcggatgtggcccgcttttgtaaccgctaccctaatattgaactgtct
tacgaagtggtggataaggacagcatccgcagtggtggcccagttgtggtgctggtgcag
ctggagcgagaggaggaagtcacaggccctgttattgcacctctcttcccacagaaacgt
gaagagggctggtgggtggtgattggagatgcaaagtccaatagcctcatctccatcaag
aggctcaccctgcaacagaaggccaaggtgaaactggactttgtggccccagccactggt
gcccacaactatactctgtacttcatgagtgacgcttatatgggatgtgaccaggagtac
aaattcagtgtggatgtgaaagaagctgagacggacagtgactcagattga
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integrated database retrieval system
