Lemur catta (Ring-tailed lemur): 123638487
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Entry
123638487 CDS
T08326
Symbol
UPF1
Name
(RefSeq) regulator of nonsense transcripts 1 isoform X1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
lcat
Lemur catta (Ring-tailed lemur)
Pathway
lcat03013
Nucleocytoplasmic transport
lcat03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
lcat00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
123638487 (UPF1)
03015 mRNA surveillance pathway
123638487 (UPF1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lcat03019
]
123638487 (UPF1)
Enzymes [BR:
lcat01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
123638487 (UPF1)
5.6.2.5 RNA 5'-3' helicase
123638487 (UPF1)
Messenger RNA biogenesis [BR:
lcat03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
123638487 (UPF1)
mRNA cycle factors
Common to processing body (P body) and stress granule
123638487 (UPF1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
NPHP3_N
ATPase
nSTAND3
Helicase_RecD
DEAD
AAA_16
UvrD-helicase
SRP54
UvrD_C_2
AAA_22
Motif
Other DBs
NCBI-GeneID:
123638487
NCBI-ProteinID:
XP_045408070
LinkDB
All DBs
Position
1:complement(119147075..119183013)
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AA seq
1157 aa
AA seq
DB search
MSVEAYGPSSQTLTFLDTEEAELLGADTQGSEFEFTDFTLPSQTQTPPGGPGGPGGGGAG
GPGGAGAGAAAGQLDAQVGPEGILQNGAVDDSVAKTSQLLAELNFEEDEEDTYYTKDLPI
HACSYCGIHDPACVVYCNTSKKWFCNGRGNTSGSHIVNHLVRAKCKEVTLHKDGPLGETV
LECYNCGCRNVFLLGFIPAKADSVVVLLCRQPCASQSSLKDINWDSSQWQPLIQDRCFLS
WLVKIPSEQEQLRARQITAQQINKLEELWKENPSATLEDLEKPGVDEEPQHVLLRYEDAY
QYQNIFGPLVKLEADYDKKLKESQTQDNITVRWDLGLNKKRIAYFTLPKTDSGNEDLVII
WLRDMRLMQGDEICLRYKGDLAPLWKGIGHVIKVPDNTNLTQRTDYGDEIAIELRSSVGA
PVEVTHNFQVDFVWKSTSFDRMQSALKTFAVDETSVSGYIYHRLLGHEVEDVIIKCQLPK
RFTAQGLPDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCA
PSNIAVDQLTEKIHQTGLKVVRLCAKSREAIDSPVSFLALHNQIRNMDSMPELQKLQQLK
DETGELSSADEKRYRALKRTAERELLMNADVICCTCVGAGDPRLAKMQFRSILIDESTQA
TEPECMVPVVLGAKQLILVGDHCQLGPVVMCKKAAKAGLSQSLFERLVVLGIRPIRLQVQ
YRMHPALSAFPSNIFYEGSLQNGVTAADRVKKGFDFQWPQPDKPMFFYVTQGQEEIASSG
TSYLNRTEAANVEKITTKLLKAGAKPDQIGIITPYEGQRSYLVQYMQFSGSLHTKLYQEV
EIASVDAFQGREKDFIILSCVRANEHQGIGFLNDPRRLNVALTRARYGVIIVGNPKALSK
QPLWNHLLNYYKEQKVLVEGPLNNLRESLMQFSKPRKLVNTINPGARFMTTAMYDAREAI
IPGSVYDRSSQASKSSCSWGCPGTVPFCPTHGRPSNMYFQTHDQIGMISAGPSHVAAMNI
PIPFNLVMPPMPPPGYFGQANGPAAGRGTPKGKTGRGGRQKNRFGLPGPSQTNLPNSQAS
QDVASQPFSQGALTQGYISMSQPSQMSQPGLSQPELSQDSYLGDEFKSQIDVALSQDSTY
QGERAYQHGGVTGLSQY
NT seq
3474 nt
NT seq
+upstream
nt +downstream
nt
atgagcgtggaggcgtacgggcccagctcacagacgctcacttttctggacaccgaagag
gccgagctgcttggcgccgatactcagggctccgagttcgagttcactgactttaccctc
cccagtcagacgcagactccccccggcggccctggcggacccggaggtggaggcgccgga
ggcccgggcggcgcgggcgctggcgctgcggcgggacagctcgacgcgcaggtcggaccc
gagggcatcctgcagaatggggccgtggacgacagtgtggccaagaccagccagttgttg
gccgaattgaactttgaagaggatgaggaagacacctattacacgaaggacctccccata
catgcctgcagttactgtggaatacatgatcctgcctgcgtggtttactgtaacaccagc
aagaagtggttctgcaatggacggggaaatacttctggcagccacattgtaaatcacctt
gtgagggcgaaatgcaaagaggtgactctgcacaaggatgggcccctgggggagacggtg
ctggagtgctacaactgcggctgccgcaatgtcttcctcctcggcttcatccccgccaag
gctgactcggtggtggtgctgctgtgcaggcagccctgcgcaagccagagcagcctgaag
gacatcaactgggacagctcacagtggcagccactgatccaggaccgctgcttcctgtcc
tggctggtcaagatcccctctgagcaggagcagctgcgggcccgccagataacggcccag
cagatcaacaagctggaagagctctggaaggaaaacccttctgccacgttggaggatctg
gagaagccaggggtggatgaggagcctcagcacgtactcctgcgatatgaggacgcctac
caataccagaacatcttcgggcccctggtgaagctggaggccgactacgacaagaagctg
aaggagtcgcagactcaagataacatcacggtcaggtgggacctgggccttaacaagaag
agaatcgcctacttcactttgcccaagactgactctggtaatgaggatttagtcataatt
tggttaagagacatgcggctcatgcagggggatgagatatgcctgcgctacaaaggggac
ctcgcgcccctgtggaaagggattggccatgtcatcaaagtccctgataacacaaactta
actcagcgcacagattatggtgatgagattgccattgagctgcggagcagtgtgggtgca
cccgtggaggtgactcacaatttccaggtggattttgtgtggaagtccacctcatttgac
aggatgcagagtgcgttgaaaacgttcgctgtggacgagacctctgtgtctggctacatc
taccacagattgctgggccacgaggtggaggatgtgatcatcaagtgccagctgccaaag
cgcttcacggcgcaagggctccccgacctcaaccactctcaggtttatgctgtgaagact
gtgctgcagaggccactaagcctgatccagggcccgccaggcaccggaaagacagtgacc
tcggccaccatcgtctaccacctggctcgacaaggcaacgggcctgtgctcgtctgtgct
ccaagcaacatcgctgtggaccagctgaccgagaagatccaccagacggggctgaaggtc
gtgcgcctctgtgccaagagccgcgaggccatcgactccccagtgtcattcctggccctg
cacaaccagatcaggaacatggacagcatgcccgagctgcagaagctgcagcagctgaag
gacgagaccggggagctgtcgtctgctgatgagaagcggtaccgggccctgaagcgcacc
gccgagagggagctgctcatgaacgcagacgtcatctgctgcacgtgtgtgggtgctggt
gacccgaggctcgccaagatgcagttccgctccattttaatcgacgaaagcacccaggcc
actgagccggagtgcatggttcctgtggtccttggtgccaagcagctgatcctcgtgggt
gaccactgccagctgggcccggtggtgatgtgcaagaaggcagccaaggccgggctgtcg
cagtcgctctttgagcgcctggtggtgctgggcatccggcccatccgcctgcaggtccag
taccggatgcacccggcactcagcgccttcccgtccaacatcttctatgagggctcactc
cagaatggcgtcactgcagcggatcgtgtgaagaagggttttgacttccagtggccgcag
cctgataagccgatgttcttctacgtgacccagggccaagaagagatcgccagctcgggc
acctcctacctgaacaggacggaagctgcaaatgtggagaagatcaccacgaagcttttg
aaggcgggcgccaagccggaccagatcggcatcatcacgccctacgagggccagcgctcc
tacctggtgcaatacatgcagttcagcggctccctgcacaccaagctctaccaggaggtg
gagatcgccagtgtggacgccttccagggccgtgagaaggacttcatcatcctctcctgt
gtgcgggccaacgagcaccagggcatcgggtttctaaatgaccccaggcgtctcaacgtg
gccctgaccagagcaaggtatggtgtcatcatcgtgggcaaccccaaggcgctgtccaag
cagccactgtggaatcacctgctgaactactacaaggagcagaaggtgctggtggagggg
cccctgaacaacctgcgtgagagcctcatgcagttcagcaagccccggaagctggtgaac
accatcaacccgggggcccgcttcatgacgacagccatgtacgacgcacgggaggccatc
atccccggctcggtctatgatcgcagcagccaggccagcaagtcatcatgtagctggggg
tgcccggggaccgtccctttttgcccaacccacggccggccctcaaacatgtacttccag
acccacgaccagatcggcatgatcagcgccggccccagccacgtggccgccatgaacatc
cccatccctttcaacctggttatgccgcccatgccgccacccggctacttcggacaagcc
aatgggccggctgcaggccggggcactccgaaaggcaagactgggcgtggggggcgccag
aagaaccgctttggacttcctgggcccagccaaaccaacctccccaatagccaggccagc
caggacgtggcatcccagcccttctcccagggtgccctgacacagggctatatctccatg
agccagccctcccagatgagccagcctggcctctcccagcccgagctgtcccaggacagc
tacctcggcgatgagtttaagtcacagatcgatgtggcactctcacaagactccacgtac
cagggagagcgggcgtaccagcacggtggggtgacagggctgtcccagtactag
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integrated database retrieval system
