Lemur catta (Ring-tailed lemur): 123639332
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Entry
123639332 CDS
T08326
Symbol
RTCB
Name
(RefSeq) RNA-splicing ligase RtcB homolog
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
lcat
Lemur catta (Ring-tailed lemur)
Brite
KEGG Orthology (KO) [BR:
lcat00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
lcat03016
]
123639332 (RTCB)
Enzymes [BR:
lcat01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
123639332 (RTCB)
Transfer RNA biogenesis [BR:
lcat03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
123639332 (RTCB)
Prokaryotic type
tRNA splicing ligases
123639332 (RTCB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Cu-oxidase_4
Motif
Other DBs
NCBI-GeneID:
123639332
NCBI-ProteinID:
XP_045408973
LinkDB
All DBs
Position
6:13472668..13493832
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AA seq
505 aa
AA seq
DB search
MSRNYNDELQFLEKINKNCWRIKKGFVPNMQVEGVFYVNDALEKLMFEELRNACRGGGVG
GFLPAMKQIGNVAALPGIVHRSIGLPDVHSGYGFAIGNMAAFDMNDPEAVVSPGGVGFDI
NCGVRLLRTNLDESDVQPVKEQLAQAMFDHIPVGVGSKGVIPMNAKDLEEALEMGVDWSL
REGYAWAEDKEHCEEYGRMLQADPNKVSARAKKRGLPQLGTLGAGNHYAEIQVVDEIFNE
YAAKKMGIDHKGQVCVMIHSGSRGLGHQVATDALVAMEKAMKRDKIIVNDRQLACARIAS
PEGQDYLKGMAAAGNYAWVNRSSMTFLTRQAFAKVFNTTPDDLDLHVIYDVSHNIAKVEQ
HVVDGKERTLLVHRKGSTRAFPPHHPLIAVDYQLTGQPVLIGGTMGTCSYVLTGTEQGMT
ETFGTTCHGAGRALSRAKSRRNLDFQDVLDKLADMGIAIRVASPKLVMEEAPESYKNVTD
VVNTCHDAGISKKAIKLRPIAVIKG
NT seq
1518 nt
NT seq
+upstream
nt +downstream
nt
atgagtcgcaactataatgatgagcttcagttcttggaaaagatcaataaaaactgctgg
aggatcaagaagggcttcgtgcccaacatgcaggttgaaggagttttctatgtgaatgat
gctctggagaaattaatgtttgaggaattaaggaatgcctgtcgaggtggtggtgttggt
ggcttcctgccagccatgaaacagattggcaatgtggcagccctgcctgggattgttcat
cgatctattgggcttcctgatgtccattcaggctatgggtttgctattgggaatatggca
gcctttgacatgaacgaccctgaagcagtggtatccccaggtggtgtcggatttgacatc
aactgtggtgtccgcttgctaagaaccaatttagatgaaagtgatgtccagcctgtgaag
gagcaacttgcccaagctatgtttgaccacattcctgttggggtgggatcaaaaggtgtc
atcccaatgaatgccaaagacctagaggaggccttggagatgggtgtggactggtcccta
agagaaggctatgcctgggctgaagacaaggagcactgtgaggagtacggaaggatgctg
caagctgatcccaataaggtctctgcaagggctaaaaaaagaggccttcctcagttgggg
accctgggagcaggcaaccactatgcagaaatccaggttgtggatgagattttcaatgag
tacgctgctaagaaaatgggcatcgaccataagggacaggtgtgtgtgatgatccacagc
ggaagtagaggcttgggccaccaagtagccacagatgcactggtagctatggaaaaggcc
atgaagagagacaagattatagttaatgaccgtcagttggcttgtgcgcgaatcgcttcc
ccagagggtcaggactacctaaagggaatggcagcagctgggaactatgcctgggtcaac
cgctcttccatgaccttcttaacccgtcaggcttttgccaaggtcttcaacacaacgccc
gatgacttggacctgcatgtgatctatgatgtttctcacaacattgccaaagtagagcag
catgtggtggacggaaaggaacggacactgttagtgcacaggaagggatccacccgcgct
ttccctcctcaccatcccctcattgctgttgattaccaacttactggacaaccagtgctc
attggtggcaccatgggaacctgtagttacgttcttacaggcactgaacagggcatgact
gagacctttggaacaacctgtcatggagcgggccgtgcattgtcccgagcaaaatctcga
cgtaatttagatttccaggatgtcttagacaaattggcagacatggggatcgcaatccgt
gttgcctcacccaaactggttatggaagaggctcctgagtcctataagaacgtgacagat
gtggtgaacacctgccatgatgctggcatcagcaagaaggccattaaactgagaccaatc
gctgttatcaaaggatag
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