Lemur catta (Ring-tailed lemur): 123640407
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Entry
123640407 CDS
T08326
Symbol
PRPF40B
Name
(RefSeq) pre-mRNA-processing factor 40 homolog B isoform X1
KO
K12821
pre-mRNA-processing factor 40
Organism
lcat
Lemur catta (Ring-tailed lemur)
Pathway
lcat03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
lcat00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
123640407 (PRPF40B)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
lcat03041
]
123640407 (PRPF40B)
Spliceosome [BR:
lcat03041
]
Complex A
U1 snRNP components
U1 related factors
123640407 (PRPF40B)
Complex B
123640407 (PRPF40B)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
FF
WW
WW_TCERG1
DUF4936
RhoGAP-FF1
WW_2
DTW
Motif
Other DBs
NCBI-GeneID:
123640407
NCBI-ProteinID:
XP_045410937
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All DBs
Position
6:complement(58252433..58275173)
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AA seq
942 aa
AA seq
DB search
MSVPDSGPRPPAAPAPFPPGPPMMPPPFMPPPGIPPPFPPMGLPPLSQRPPAIPPMPPGI
LPPMLPPMGAPPPLTQIPGMVPPMMPGMLMPAVPVTAATAPGADTASSAVAGTGLPRALW
SEHVAPDGRIYYYNADDKQSVWEKPSVLKSKAELLLSQCPWKEYKSDTGKPYYYNNQSKE
SRWTRPKDLDDLEALVKQEAAGKQQQPQPLQPQPPQPQPDPPPVPPGPTPVPTGLLEPEP
GGSEDCDVSEAPQPLEQGFLQQLEEGPSSSAGQHQPQQEEEESKPEPERSGLSWSNREKA
KQAFKELLRDKAVPSNASWEQAMKMVVTDPRYSALPKLSEKKQAFNAYKAQREKEEKEEA
RLRAKEAKQTLQHFLEQHERMTSTTRYRRAEQTFGELEVWAVVPERDRKEVYDDVLFFLA
KKEKEQAKQLRRRNIQALKSILDGMSSVTFQTTWSQAQQYLMDNPSFAQDHQLQNMDKED
ALICFEEHIRALEREEEEERERARLRERRQQRKNREAFQTFLDELHETGQLHSMSTWMEL
YPAVSTDVRFANMLGQPGKAARLPLLWPGFLPCQPLCAPPSWSCSRPQPQALGSCRPPGP
PPSLPAGSTPLDLFKFYVEELKARFHDEKKIIKDILKDRGFCVEVNTAFEDFAHVISFDK
RAAALDAGNIKLTFNSLLEKAEAWEREREKEEARRMRRREAAFRSMLRQAVPALELGTTW
EEVRERFVCDSAFEQITLESERIRLFREFLQVLEQTECQHLHTKGRKHGRKGKKHHRKRS
HSPSGSESEEEELPPPSLRPPKRRRRNPSESGSEPSSSLDSVESGGAALGGRGSPSSHLI
LGSDHGLRKAKKPKKKTKKRRHKSNSPESETDPEEKAGKDSDEKEQEQDKDRELRHTELP
NRSPGFGIKKEKTGWDTSESELSEGELERRRRTLLQQLDDHQ
NT seq
2829 nt
NT seq
+upstream
nt +downstream
nt
atgtcggttcccgattctggtccccggcccccagcagcgcctgcccccttcccaccgggg
ccccccatgatgccaccacccttcatgccccctccagggatccccccaccctttcctccg
atggggctaccccccctgagtcagagaccaccagccatcccccccatgccacctggcatc
ctgccccctatgcttccaccaatgggggcgccacctccactcacacagataccaggaatg
gtacctccgatgatgccaggaatgctaatgccagcagtgcctgtcaccgcagcgacggct
ccaggtgcggacaccgccagctctgctgtggctgggacaggccttccgagggccctatgg
agtgagcatgtggcccctgatgggcgcatctactactacaatgctgacgacaagcagtcc
gtgtgggagaagcccagcgtgctcaagtccaaggcggagctgctgctgtcccagtgtccc
tggaaagaatacaagtcggacacaggcaaaccttactactataacaaccagagtaaggaa
tcccgctggacccgacccaaggatctggatgacctggaggctctagtcaaacaggaggct
gcagggaagcagcagcagccacagccactacagccacagcctcctcagccacagcccgac
cccccacctgtacctcctggccccaccccagtgcccacaggcctcttggaacctgagcca
ggcgggagtgaagactgtgatgtgtcagaggctcctcagcccctggagcaggggttcctg
cagcagctggaggagggccccagcagttctgctggacagcatcagccacagcaggaggag
gaggaatcaaagccagaaccagagaggtctggcctcagttggagcaaccgggagaaggca
aaacaggcgttcaaggagctgctgagggacaaggctgtcccctccaatgcctcatgggaa
caggccatgaagatggtggtcactgacccccgttacagtgccttacccaaactgagtgag
aagaagcaagcattcaatgcctacaaggcgcagcgggagaaggaggagaaggaagaggcc
cggctgagggccaaggaggccaagcagaccctgcagcacttcctggagcagcacgaacgc
atgacctccaccacccgctaccggcgggcagaacagacctttggagagctagaggtctgg
gctgtggtccctgagagggatcgaaaagaggtttatgatgatgtcctcttcttcctggcc
aagaaggaaaaggaacaggccaagcagctccgacgccgcaacatccaggccctgaagagc
atcctggatgggatgagtagtgtcaccttccaaaccacgtggtcccaggcccagcagtac
ctcatggataaccccagctttgctcaggaccatcagctgcagaacatggacaaggaagat
gccctgatctgctttgaggagcacatccgagctttggagagggaggaggaggaggagcga
gagcgggctcggcttcgggagcgtcgccagcaacgcaagaacagggaggcctttcagacc
ttcctggacgagctgcatgagaccgggcagctgcactctatgtccacctggatggagctc
tacccagcggtcagcactgatgtccgctttgccaacatgctgggccagccgggtaaggca
gccaggctcccccttctctggcctggcttcctgccctgccagcctctctgcgcccctcct
tcctggtcctgttctcggccccaaccccaggccttgggaagctgccgcccgccaggcccc
cctccctccctccctgcaggctccacccctctggacttgttcaagttctatgtagaggag
ttgaaggcacgattccatgatgagaagaagatcattaaggacatccttaaggaccggggc
ttctgcgtggaggtgaacacagcctttgaggacttcgcccacgtcataagctttgacaag
agggctgctgcgctggacgcaggcaacatcaagctgaccttcaatagtctgctggagaaa
gcagaggcatgggagagggagcgggagaaggaggaggcacgaaggatgcggcgcagggaa
gctgcctttcgaagcatgctgaggcaggccgtgcctgctctggagctaggcactacctgg
gaagaggtccgtgagcgctttgtgtgcgactcagcctttgagcagatcaccctggagtcg
gaacggatccggctcttccgggaatttctccaggtgctggagcagactgaatgccagcac
ctccacacaaaaggccgaaagcacggcaggaagggcaagaagcaccatcgcaagcgttcc
cactcaccctcaggctctgagtcggaagaggaggagctgcccccaccatctctccggccc
cccaagcggaggaggcggaacccctcggagtcaggctctgagccctcttcctcacttgat
tcggttgaaagtgggggtgctgcccttggaggacggggctccccttcctcccaccttatc
cttggatcagatcatggccttcggaaagccaagaaaccaaaaaagaaaactaaaaagaga
agacacaagtcgaacagccctgagagtgagacagaccccgaggagaaagctggcaaggac
agtgatgagaaagaacaggaacaggacaaggacagggagctccggcacacagagctccct
aaccgttccccaggctttggcatcaagaaggagaagacgggctgggacacgtcggaaagc
gagctgagcgagggcgagctggagcggcggcggcgcacactcttacagcagctggatgat
caccagtga
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