Lemur catta (Ring-tailed lemur): 123643340
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Entry
123643340 CDS
T08326
Symbol
SF3B1
Name
(RefSeq) splicing factor 3B subunit 1 isoform X1
KO
K12828
splicing factor 3B subunit 1
Organism
lcat
Lemur catta (Ring-tailed lemur)
Pathway
lcat03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
lcat00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
123643340 (SF3B1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
lcat03041
]
123643340 (SF3B1)
03036 Chromosome and associated proteins [BR:
lcat03036
]
123643340 (SF3B1)
Spliceosome [BR:
lcat03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
123643340 (SF3B1)
Complex B
123643340 (SF3B1)
Complex C
U2 SnRNP specific factors
123643340 (SF3B1)
Chromosome and associated proteins [BR:
lcat03036
]
Eukaryotic type
Chromatin remodeling factors
B-WICH complex
123643340 (SF3B1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SF3b1
PPP2R1A-like_HEAT
TOR1L1_N
HEAT_EZ
HEAT_EF3_N
HEAT_ECM29
Htt_N-HEAT_1
HEAT_2
XMAP215_CLASP_TOG
Adaptin_N
UNC45-central
DUF2298
TALPID3
Motif
Other DBs
NCBI-GeneID:
123643340
NCBI-ProteinID:
XP_045414761
LinkDB
All DBs
Position
8:33937496..33973117
Genome browser
AA seq
1304 aa
AA seq
DB search
MAKIAKTHEDIEAQIREIQGKKAALDEAQGVGLDSTGYYDQEIYGGSDSRFAGYVTSIAA
TELEDDDDDYSSSTSLLGQKKPGYHAPVALLNDIPQSTEQYDPFAEHRPPKIADREDEYK
KHRRTMIISPERLDPFADGGKTPDPKMNARTYMDVMREQHLTKEEREIRQQLAEKAKAGE
LKVVNGAAASQPPSKRKRRWDQTADQTPGATPKKLSSWDQAETPGHTPSLRWDETPGRAK
GSETPGATPGSKIWDPTPSHTPAGAATPGRGDTPGHATPGHGGATSSARKNRWDETPKTE
RDTPGHGSGWAETPRTDRGGDSIGETPTPGASKRKSRWDETPASQMGGSTPVLTPGKTPI
GTPAMNMATPTPGHIMSMTPEQLQAWRWEREIDERNRPLSDEELDAMFPEGYKVLPPPAG
YVPIRTPARKLTATPTPLGGMTGFHMQTEDRTMKSINDQPSGNLPFLKPDDIQYFDKLLV
DVDESTLSPEEQKERKIMKLLLKIKNGTPPMRKAALRQITDKAREFGAGPLFNQILPLLM
SPTLEDQERHLLVKVIDRILYKLDDLVRPYVHKILVVIEPLLIDEDYYARVEGREIISNL
AKAAGLATMISTMRPDIDNMDEYVRNTTARAFAVVASALGIPSLLPFLKAVCKSKKSWQA
RHTGIKIVQQIAILMGCAILPHLRSLVEIIEHGLVDEQQKVRTISALAIAALAEAATPYG
IESFDSVLKPLWKGIRQHRGKGLAAFLKAIGYLIPLMDAEYANYYTREVMLILIREFQSP
DEEMKKIVLKVVKQCCGTDGVEANYIKTEILPPFFKHFWQHRMALDRRNYRQLVDTTVEL
ANKVGAAEIISRIVDDLKDEAEQYRKMVMETIEKIMGNLGAADIDHKLEEQLIDGILYAF
QEQTTEDSVMLNGFGTVVNALGKRVKPYLPQICGTVLWRLNNKSAKVRQQAADLISRTAV
VMKTCQEEKLMGHLGVVLYEYLGEEYPEVLGSILGALKAIVNVIGMHKMTPPIKDLLPRL
TPILKNRHEKVQENCIDLVGRIADRGAEYVSAREWMRICFELLELLKAHKKAIRRATVNT
FGYIAKAIGPHDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPFTVLPALMNEYRVPE
LNVQNGVLKSLSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQTASAVVQHMSLGVY
GFGCEDSLNHLLNYVWPNVFETSPHVIQAVMGALEGLRVAIGPCRMLQYCLQGLFHPARK
VRDVYWKIYNSIYIGSQDALIAHYPRIYNDDKNTYIRYELDYIL
NT seq
3915 nt
NT seq
+upstream
nt +downstream
nt
atggcgaagatcgccaagactcacgaagatattgaagcacagattcgagaaattcaaggc
aagaaggcagctcttgatgaagctcaaggagtgggccttgattcaacaggttactatgac
caggaaatttatggtggaagtgacagcagatttgctggatatgtgacatcaattgctgca
actgaacttgaagatgatgacgatgactactcatcatctacaagtttgcttggtcagaag
aagccaggatatcatgcccctgtggcattgcttaatgacataccacagtcaacagaacag
tatgatccatttgctgagcaccgacctccaaagattgcagaccgggaagatgaatacaaa
aagcataggcggaccatgataatttccccagagcgtcttgatccttttgcagatggaggg
aagacccctgatcctaaaatgaatgctaggacttacatggatgtaatgcgcgaacagcat
ttgactaaagaagaacgagaaattaggcagcagctagcagagaaagctaaagctggagaa
ctaaaagtcgtcaacggagcagcagcatcccagcctccgtcaaaacgaaaacggcgttgg
gatcaaacagctgatcagactcctggtgccactcccaaaaagctgtcaagttgggatcag
gcagagacccccgggcataccccttccttaagatgggatgagacaccaggtcgtgcaaag
ggaagtgagactcctggagcaactccaggctcaaaaatatgggaccctacacctagtcac
acaccagcgggagctgctactcctggacgaggcgatacaccaggtcatgcgacaccaggc
catggaggtgcaacttccagtgctcgtaaaaacagatgggatgagaccccgaaaacagag
agagatactcctggacatggaagtggatgggctgagactcctcgaacagatagaggtgga
gattcaattggtgaaacaccgactcctggtgccagtaaaagaaagtcacgttgggatgaa
acaccagctagtcagatgggtggaagcactcctgttctgacccctggaaaaacaccaatt
ggcacaccagccatgaacatggctacccctactccaggtcacataatgagtatgactcct
gaacaacttcaggcttggcggtgggaaagagaaattgatgagagaaatcgcccactttct
gatgaagaattggatgctatgttcccagaaggatataaggtccttcctcctccagctggt
tatgttcctattcgaactccagctcgaaaactgacagctactccaacgcctttgggtggt
atgactggttttcacatgcaaactgaagatagaactatgaaaagcattaatgatcagcca
tctggaaatcttccatttttaaaacctgatgatattcagtactttgataaactattggtt
gatgttgatgaatcaacacttagtccagaagaacagaaagagagaaaaataatgaagttg
cttttaaaaattaagaatggaacaccaccaatgagaaaggctgcattgcgtcagattact
gataaagctcgtgaatttggagctggtcctttgtttaatcagattcttcctctactaatg
tctcctacacttgaggatcaagagcgtcatttacttgtgaaagttattgatagaatactg
tacaaacttgatgatttagttcgaccgtatgtgcacaagatccttgtggtcattgaaccg
ctgttgattgatgaagattactatgctagagtggaaggccgagagattatttctaatttg
gcaaaggctgctggtctggctactatgatctctaccatgagacctgatatagataacatg
gatgaatatgtccgtaacacaacagctagagcttttgctgttgtagcctctgccctgggc
attccttctttattgcccttcttaaaagctgtgtgcaaaagcaagaagtcgtggcaagcg
agacacactggtattaagattgtacagcagatagctattcttatgggctgtgccatcttg
ccacatctgagaagtttagttgaaattattgagcatggtcttgtagatgagcagcagaaa
gttcggaccattagtgctttggccattgctgccttagctgaagcagcaactccttatggt
atcgaatcatttgattctgtgttaaagcctctatggaagggtatccgccaacacagagga
aagggtttggctgctttcttaaaggctattggatatcttattcctctcatggatgcagaa
tatgctaactactatacgagagaagtgatgttaattcttattcgagaattccaatctcct
gatgaagaaatgaagaaaattgtgctgaaggtggtaaaacaatgttgtggtacagatggt
gtagaagcaaactatatcaaaacagagattcttcctcctttttttaaacacttctggcag
cacagaatggctttggatagaagaaattaccggcagttagttgatactactgtggagttg
gcaaacaaagtaggtgcagcagaaattatatccaggattgtggatgatctgaaagatgaa
gctgaacagtacagaaaaatggtgatggagacaattgagaaaattatgggtaacttggga
gcagcagatattgaccataaacttgaagaacaactgattgatggtattctttatgctttc
caagaacagactacagaggactcagtaatgttgaatggctttggcacagtggttaatgct
cttggcaaacgagtcaaaccatatttgcctcagatctgtggtacagttttgtggcgttta
aataacaaatcagcaaaagttaggcagcaggcagctgatctgatttctcgaactgctgtt
gtcatgaagacttgtcaagaggaaaaattgatggggcacttgggtgttgtattgtatgag
tatttgggtgaagagtaccctgaagtattgggcagcattcttggagcactgaaggccatt
gtaaatgtaataggtatgcataagatgaccccaccaattaaagatctgctgcctagactc
acccccatcttaaagaataggcatgaaaaagtacaagagaattgtattgatcttgttgga
cgtattgctgacaggggagctgagtatgtatctgcaagagaatggatgaggatttgcttt
gagcttttagaactcctaaaagctcacaaaaaagctattcgtagagccacagtcaacaca
tttggttatattgcaaaggccattggcccacatgacgtattggctacacttttaaacaac
ctcaaagttcaggaaaggcagaacagagtttgtaccactgtagcaatagctattgttgca
gaaacatgttcacctttcacagtactccctgccttaatgaatgaatacagagttcctgaa
ctgaatgttcaaaatggagtgttgaaatcactttctttcttgtttgaatatattggtgaa
atgggaaaggactacatttatgctgtgacacctttacttgaagatgctttaatggatagg
gaccttgtacacagacagacagctagtgcggtggtacaacacatgtcacttggggtttat
ggatttggttgtgaagattcactgaatcacttgttgaactatgtatggcccaatgtgttt
gagacatctcctcacgtaattcaggcagttatgggagccctggagggcctgagagttgca
attggaccatgtagaatgttgcagtattgtttacagggtctgtttcacccagcccggaaa
gtcagagatgtgtattggaaaatttacaactccatctacattggttcccaggatgctctc
atagcacattacccaagaatctacaatgatgataagaatacttatattcgttatgaactt
gactatatcctataa
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integrated database retrieval system
